BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4638146	117 (0.910)	6 (0.050)	6/156	NT	5.2%	intergenic (+26/‑32)	creC/creD	sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein
*	?	NC_000913	= 4638170	116 (1.040)	6 (0.050)	6/156	NT	5.2%	intergenic (+50/‑8)	creC/creD	sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein
Rejected: Frequency below cutoff threshold.

Only 100 of 163 total aligned reads displayed.

AGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTG  >  NC_000913/4638071‑4638267

aGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGga                                                                                                      <  1:929511/100‑1 (MQ=255)

 ggAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAg                                                                                                     <  1:2839322‑M2/100‑2 (MQ=255)

      gtggtgTGCTGGCCTCGCTTTGACTTCACCGTCACTTCAAATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagac                                                                                                >  2:2760121‑M2/1‑94 (MQ=255)

      gTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagac                                                                                                >  2:527116‑M2/1‑94 (MQ=255)

      gTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagac                                                                                                >  1:1809627‑M2/1‑94 (MQ=255)

       tGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagact                                                                                               <  1:2730119‑M2/100‑8 (MQ=255)

           gTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgt                                                                                           >  2:216250‑M2/1‑89 (MQ=255)

           gTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgt                                                                                           <  1:721049‑M2/100‑12 (MQ=255)

            tGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGGTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAACGAGTCGCCTATGtt                                                                                          >  1:2139407/1‑100 (MQ=255)

            tGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGtt                                                                                          >  1:1200628/1‑100 (MQ=255)

             gCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTg                                                                                         <  1:2517685/100‑1 (MQ=255)

             cgatctcTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTg                                                                                         <  1:3021331/94‑1 (MQ=255)

              cTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGa                                                                                        <  2:1307368/100‑1 (MQ=255)

              cTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGa                                                                                        >  1:2674047/1‑100 (MQ=255)

              cTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGa                                                                                        <  2:354289/100‑1 (MQ=255)

               tGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaa                                                                                       <  2:1629546/100‑1 (MQ=255)

               tGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaa                                                                                       >  2:2579838/1‑100 (MQ=255)

               tGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaa                                                                                       >  2:561451/1‑100 (MQ=255)

                ggCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaaa                                                                                      >  2:3399115/1‑100 (MQ=255)

                ggCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGaaa                                                                                      <  1:140052/100‑1 (MQ=255)

                  ccTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑c                                                                                   >  2:1624549/1‑100 (MQ=255)

                  ccTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑c                                                                                   <  2:2629509/100‑1 (MQ=255)

                   cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAGAT‑cg                                                                                  >  2:3021355/1‑99 (MQ=255)

                   cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑cc                                                                                  <  1:749345/100‑1 (MQ=255)

                      gCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccc‑cc                                                                              >  1:3406493/1‑100 (MQ=255)

                       cTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccc‑ccc                                                                             >  2:1959655/1‑100 (MQ=255)

                        ttCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccc‑cccc                                                                            <  1:2149075/100‑2 (MQ=255)

                        ttCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccc‑cccc                                                                            <  2:1429570/100‑2 (MQ=255)

                           gACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgtgggaagaatttgaagc                                                                           <  2:803132‑M2/100‑28 (MQ=255)

                            aCTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑ccc‑cccctgtt                                                                        >  1:3424210/1‑95 (MQ=255)

                             cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTc                                                                       >  1:369569/1‑100 (MQ=255)

                             cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTc                                                                       <  1:1630997/100‑1 (MQ=255)

                             cTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTc                                                                       >  1:703926/1‑100 (MQ=255)

                              ttCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCt                                                                      <  2:876739/100‑1 (MQ=255)

                               tCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTg                                                                     <  2:1120136/100‑1 (MQ=255)

                                cACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTgg                                                                    <  1:1581533/100‑1 (MQ=255)

                                 aCCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGa                                                                   >  2:196882/1‑100 (MQ=255)

                                   cGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGaaa                                                                 <  1:1308957/100‑1 (MQ=255)

                                    gTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGaaaa                                                                >  2:1601559/1‑100 (MQ=255)

                                    gTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGaaaa                                                                <  1:1959639/100‑1 (MQ=255)

                                    gTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGaa                                                                  <  2:1379584/98‑1 (MQ=255)

                                     tCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAAt                                                               <  2:1252182/100‑1 (MQ=255)

                                      cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCC‑CCC‑TGTTCTGGAAAATGa                                                             >  2:2033025/1‑100 (MQ=255)

                                       aCTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGa                                                             >  2:476817/1‑100 (MQ=255)

                                        cTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGAc                                                            <  1:2346238/100‑1 (MQ=255)

                                           cacaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAg                                                         >  1:2062466/1‑100 (MQ=255)

                                           cacaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAg                                                         <  1:2481970/100‑1 (MQ=255)

                                               tAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTg                                                     <  2:3310732/100‑1 (MQ=255)

                                                  cTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGttt                                                  >  2:2117377/1‑100 (MQ=255)

                                                    tCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTATGGAAAATGACTAGACTgcctgg                                                >  2:635137/1‑95 (MQ=255)

                                                      aaaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTg                                              >  2:914808/1‑100 (MQ=255)

                                                       aaTTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGc                                             <  2:322940/100‑1 (MQ=255)

                                                           cttcCCACATAGTATTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCCGCCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAg                                           >  1:1519001/1‑98 (MQ=255)

                                                            ttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGCAAATGACTAGCCTGTTTGGTGCAGTAt                                        >  1:2581901/1‑100 (MQ=255)

                                                              cccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTg                                      <  2:1177841/100‑1 (MQ=255)

                                                              cccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTg                                      >  2:1938879/1‑100 (MQ=255)

                                                              cccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTg                                      <  2:703930/100‑1 (MQ=255)

                                                               ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgtgggaagaatttgaagctatgtgaagtgacggtgaagtcgaagcgaggccagc                                       <  1:1093731‑M2/100‑64 (MQ=255)

                                                               ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGc                                     <  1:2158849/100‑1 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTTCt                                    >  1:1481089/1‑100 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                    >  1:1834450/1‑100 (MQ=255)

                                                                cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCt                                    >  2:299028/1‑100 (MQ=255)

                                                                 acaTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgt                                  <  2:2252284/100‑1 (MQ=255)

                                                                  caTAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgt                                  >  2:2533177/1‑100 (MQ=255)

                                                                    tAGTCTTCGTATCCTGCTGCCATTGCAAAGGAgaagactatgtgggaagaatttgaagctatgtgaagtgacggtgaagtcgaagcgaggccagcacgcc                                  <  1:592571‑M2/100‑69 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                              >  2:1884734/1‑100 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                              <  1:2883038/100‑1 (MQ=255)

                                                                      gTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTgttgtt                              >  2:235463/1‑100 (MQ=255)

                                                                         ttCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAt                           <  1:561447/100‑1 (MQ=255)

                                                                          tCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGAtt                          <  1:2487343/100‑1 (MQ=255)

                                                                            gTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                        <  2:2839345/100‑1 (MQ=255)

                                                                            gTATCCTGCGGCCATTGCAAAGGATAAGTGGATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCGTTTTGGTGCAGTATTGCTGTTGTTGATTcc                        <  1:3315900/100‑1 (MQ=255)

                                                                              aTCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGa                      <  2:2674067/100‑1 (MQ=255)

                                                                                ccTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGAt                     <  1:1234815/99‑1 (MQ=255)

                                                                                 ctgctgCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATaa                   >  1:905802/1‑100 (MQ=255)

                                                                                 ctgctgCCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTATGGTGCAGTATTGCTGTTGTTGATTCCGATaa                   <  2:3278716/100‑1 (MQ=255)

                                                                                  tgctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAAt                  <  2:1844525/100‑1 (MQ=255)

                                                                                    ctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGc                <  1:3352564/100‑1 (MQ=255)

                                                                                    ctgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGc                >  1:2240381/1‑100 (MQ=255)

                                                                                    ctgcCATTGCAAAGCAGAAGACTATGTTGAGAT‑CCC‑CCCTTGTTCTGGAAAATGACTAGCCTGTTTTGTGCAGTATTGCTGTTGTTGATTCCTATAATGc                <  1:1703408/100‑1 (MQ=255)

                                                                                     tgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt               >  2:3066153/1‑100 (MQ=255)

                                                                                     tgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt               <  1:3224241/100‑1 (MQ=255)

                                                                                     tgcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt               >  1:2561434/1‑100 (MQ=255)

                                                                                      gcCATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCt               <  2:2277566/99‑1 (MQ=255)

                                                                                       ccATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGa             >  2:397106/1‑100 (MQ=255)

                                                                                        cATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt            <  2:1216871/100‑1 (MQ=255)

                                                                                        cATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt            <  1:1134155/100‑1 (MQ=255)

                                                                                        cATTGCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCATGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt            >  1:2214931/1‑100 (MQ=255)

                                                                                            gCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCgg        >  2:2790118/1‑100 (MQ=255)

                                                                                            gCAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCgg        >  2:325165/1‑100 (MQ=255)

                                                                                             cAAAGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGATGATTTgg        >  1:3381250/1‑99 (MQ=255)

                                                                                              aaaGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa      <  1:914801/100‑1 (MQ=255)

                                                                                              aaaGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa      <  2:2294656/100‑1 (MQ=255)

                                                                                              aaaGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGCTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa      <  2:2338118/100‑1 (MQ=255)

                                                                                               aaGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAg     >  2:3146699/1‑100 (MQ=255)

                                                                                               aaGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAg     <  1:1854534/100‑1 (MQ=255)

                                                                                                aGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAgg    >  1:1002913/1‑100 (MQ=255)

                                                                                                aGGAGAAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAgg    <  1:3250636/100‑1 (MQ=255)

                                                                                                  gagaAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGTCTAGCCTGTTTGGTGCTGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg  <  1:2056268/100‑1 (MQ=255)

                                                                                                  gagaAGACTATGTTGAAATCCCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTg  <  1:3309708/100‑1 (MQ=255)

AGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGGAGAAGACTATGTTGAAAT‑CCC‑CCC‑TGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTG  >  NC_000913/4638071‑4638267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.