New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3234638 =NA (NA)6 (0.050) 5/164 NT NA noncoding (1/86 nt) REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3234671 = NA (NA)noncoding (34/86 nt) REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 172 total aligned reads displayed.

GAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAT  >  NC_000913/3234541‑3234737
                                                                                                 |                                                                                                   
gaaTAAACGTAGAAAAACGCTAAACAAGTGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGcc                                                                                                   <  1:2419110/100‑1 (MQ=255)
gaaTAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTg                                                                                                     >  1:773113/1‑98 (MQ=255)
gaaTAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGcc                                                                                                   <  2:2491540/100‑1 (MQ=255)
aagcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGcc                                                                                                   <  2:1368318‑M1/3‑1 (MQ=255)
aagcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGcc                                                                                                   <  1:2084082‑M1/3‑1 (MQ=255)
 agcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCg                                                                                                  >  2:2400930‑M1/97‑100 (MQ=255)
 agcggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCg                                                                                                  >  1:1510271‑M1/97‑100 (MQ=255)
 aaTAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGc                                                                                                    >  2:2084098/1‑98 (MQ=255)
   tAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGa                                                                                                <  2:954612/100‑1 (MQ=255)
   tAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGa                                                                                                <  2:1048692/100‑1 (MQ=255)
   cggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGa                                                                                                >  2:3046944‑M1/95‑100 (MQ=255)
    ggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGAt                                                                                               <  2:427902‑M1/7‑1 (MQ=255)
    ggtgaagctgggacgtcgtcggtaagattgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGAt                                                                                               <  1:1899784‑M1/7‑1 (MQ=255)
     aaCGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATg                                                                                              >  2:1084510/1‑100 (MQ=255)
     aaCGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATg                                                                                              <  2:2560525/100‑1 (MQ=255)
     aaCGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATg                                                                                              <  1:1943329/100‑1 (MQ=255)
      aCGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGc                                                                                             <  2:3083385/100‑1 (MQ=255)
      aCGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGc                                                                                             <  2:2949003/100‑1 (MQ=255)
       cGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCg                                                                                            >  2:1368887/1‑100 (MQ=255)
        gTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGa                                                                                           <  2:1324409/100‑1 (MQ=255)
           gAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGATGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGc                                                                                        <  1:1890980/100‑1 (MQ=255)
            aaaaaCGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTTTTTTTTTTTTGCGCCATTACCGAACTGGGGAGACATTTCCGTATTCGACgtt                                                                                       >  1:2327600/1‑98 (MQ=255)
               aaCGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGc                                                                                    >  1:338944/1‑100 (MQ=255)
                 cGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCcg                                                                                  >  2:87349/1‑100 (MQ=255)
                 cGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCcg                                                                                  >  2:2493998/1‑100 (MQ=255)
                 cGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCcg                                                                                  >  1:3225785/1‑100 (MQ=255)
                   cTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCcgcg                                                                                <  1:1516939/100‑1 (MQ=255)
                   cTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCcgcg                                                                                <  2:2130701/100‑1 (MQ=255)
                   cTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCcgcg                                                                                >  2:2300551/1‑100 (MQ=255)
                    tAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGt                                                                               >  1:1630742/1‑100 (MQ=255)
                    tAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGt                                                                               <  1:2394001/100‑1 (MQ=255)
                     aaaCAAGAGACTGTAGCCGATGGGGAAAGGGCTTTTTTGTTTTATGGACGCGCAATTCCAGAACTGGGCAGACATTGACGGATGCGTCGCTTGCagcg                                                                                >  1:1548883/1‑98 (MQ=255)
                     aaaCAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTc                                                                              <  1:1368875/100‑1 (MQ=255)
                     aaaCAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTc                                                                              >  1:495731/1‑100 (MQ=255)
                     aaaCAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTc                                                                              <  2:2999892/100‑1 (MQ=255)
                        cAAGAGAATGTAGACGATGGTGACAGGGATTTTTTTTTTTTTTTTAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCtt                                                                            >  1:909375/1‑99 (MQ=38)
                        cAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTa                                                                           >  2:3202424/1‑100 (MQ=255)
                         aaGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTAt                                                                          >  1:3107971/1‑100 (MQ=255)
                            agaATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCg                                                                       >  1:1648015/1‑100 (MQ=255)
                            agaATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCg                                                                       <  2:328154/100‑1 (MQ=255)
                             gattgggagtgacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGATGCGACGCTTGCCGCGTCTTATCCgg                                                                      >  1:2254626‑M1/69‑100 (MQ=255)
                             gaATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCgg                                                                      <  1:3368348/100‑1 (MQ=255)
                               ttgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGATGCGACGCTTGCCGCGTCTTATCCGGcc                                                                    >  1:451722‑M1/67‑100 (MQ=255)
                                tgggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGATGCGACGCTTGCCGCGTCTTATCCGGc                                                                     >  1:500031‑M1/66‑98 (MQ=255)
                                tGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCt                                                                   >  1:3026270/1‑100 (MQ=255)
                                 gggagttacctgccggatgcggcgtaaacgccttatccggcctacgttcagcacgttactccagGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTg                                                                  >  1:561569‑M1/65‑100 (MQ=255)
                                 gTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTg                                                                  >  1:25722/1‑100 (MQ=255)
                                 gTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTg                                                                  >  2:2373322/1‑100 (MQ=255)
                                  tAGACGATGGTGACATGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTgg                                                                 <  2:3404135/100‑1 (MQ=255)
                                  tAGACGATGGTGACAGGGATTTTTTGTTTTTTGGAAGCGCGATTCCAGACCTGTGCAGACCTTGTCGGAGGCGACGCTTGCCGGGTCTCATCCgccgtg                                                                  >  1:754887/1‑94 (MQ=255)
                                  tAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTgn                                                                 <  1:770788/100‑2 (MQ=255)
                                    gACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAg                                                               >  1:1118837/1‑100 (MQ=255)
                                     aCGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGt                                                              <  2:2767318/100‑1 (MQ=255)
                                      cGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTa                                                             >  2:1141976/1‑100 (MQ=255)
                                      cGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTa                                                             >  1:1012887/1‑100 (MQ=255)
                                       gATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACAGTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTaa                                                            >  1:2214795/1‑100 (MQ=255)
                                             gACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCt                                                      <  1:1455381/100‑1 (MQ=255)
                                              aCAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTg                                                     <  1:1762549/100‑1 (MQ=255)
                                                aGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGaa                                                   <  1:2694172/100‑1 (MQ=255)
                                                 gggATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAc                                                  <  2:323937/100‑1 (MQ=255)
                                                 gggATTTTCTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGCAc                                                  >  1:24051/1‑100 (MQ=255)
                                                  ggATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACg                                                 <  1:1755535/100‑1 (MQ=255)
                                                   gATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGt                                                <  2:1874917/100‑1 (MQ=255)
                                                      tttttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAgg                                             <  1:3119841/100‑1 (MQ=255)
                                                           gTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGa                                        >  1:431734/1‑100 (MQ=255)
                                                              ttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATaa                                     >  1:1804318/1‑100 (MQ=255)
                                                               tATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAg                                    >  1:2376288/1‑100 (MQ=255)
                                                               tATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAg                                    >  2:175346/1‑100 (MQ=255)
                                                                aTGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAgg                                   <  2:1577578/100‑1 (MQ=255)
                                                                 tGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATACGGc                                  >  2:284297/1‑100 (MQ=255)
                                                                  ggAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg                                 <  2:2976709/100‑1 (MQ=255)
                                                                  ggAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCg                                 <  1:2830638/100‑1 (MQ=255)
                                                                    aaGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGtt                               <  2:670387/100‑1 (MQ=255)
                                                                      gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTa                             <  2:824667/100‑1 (MQ=255)
                                                                       cgcgATTCCAGAACTGGGCAGACATTGCCGGATGCGTCGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAc                            <  2:2426213/100‑1 (MQ=255)
                                                                        gcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcg                           >  2:1692680/1‑100 (MQ=255)
                                                                         cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc                          <  1:881105/100‑1 (MQ=255)
                                                                         cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc                          >  1:246058/1‑100 (MQ=255)
                                                                         cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc                          <  2:2689661/100‑1 (MQ=255)
                                                                          gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgcc                         <  2:1154598/100‑1 (MQ=255)
                                                                           aTTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccg                        <  1:1084501/100‑1 (MQ=255)
                                                                              ccAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCAt                     >  2:2128570/1‑100 (MQ=255)
                                                                              ccAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCAt                     >  2:211197/1‑100 (MQ=255)
                                                                              ccAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCAt                     >  1:2589411/1‑100 (MQ=255)
                                                                               cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATc                    <  1:2903001/100‑1 (MQ=255)
                                                                                  aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                 <  1:2373303/100‑1 (MQ=255)
                                                                                   aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                <  1:1736753/100‑1 (MQ=255)
                                                                                   aCTGGGCAGACATTGCCGGACGCGACGCTTGCCGCGTCGTATCCGGCCTGGCGTAACGTGCTCAACGCACGCGGGATAACGCGTTTAccccccgcgcggc                >  1:2693000/1‑91 (MQ=21)
                                                                                    cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCCTCCGGCa               <  2:1815166/100‑1 (MQ=255)
                                                                                     tGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg              >  1:2292826/1‑100 (MQ=255)
                                                                                     tGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg              <  2:1855175/100‑1 (MQ=255)
                                                                                      gggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg             >  1:1671745/1‑100 (MQ=255)
                                                                                       ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt            <  2:1770640/100‑1 (MQ=255)
                                                                                       ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGt            <  1:117253/100‑1 (MQ=255)
                                                                                        gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa           >  1:49517/1‑100 (MQ=255)
                                                                                           gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt        <  2:2617639/100‑1 (MQ=255)
                                                                                           gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt        >  1:2493130/1‑100 (MQ=255)
                                                                                           gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt        >  2:2650218/1‑100 (MQ=255)
                                                                                           gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGACGCATCCGGAAggca           >  2:2016230/1‑95 (MQ=255)
                                                                                                 GCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAAATCCCAAt  <  1:104675‑M1/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
GAATAAACGTAGAAAAACGCTAAACAAGAGAATGTAGACGATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAT  >  NC_000913/3234541‑3234737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.