BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3754860 =	NA (NA)	11 (0.090)	7/164	NT	NA	noncoding (1/82 nt)	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	3754890 =	NA (NA)	11 (0.090)	7/164	NT	NA	noncoding (31/82 nt)	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP270 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 224 total aligned reads displayed.

GACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCG  >  NC_000913/3754761‑3754958

gACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATg                                                                                                    >  1:3365780/1‑100 (MQ=255)

  cAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTGAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGcc                                                                                                  >  2:2878827/1‑100 (MQ=255)

  cAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGcc                                                                                                  >  1:1105175/1‑100 (MQ=255)

    aaaCACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCgg                                                                                                >  2:1127437/1‑100 (MQ=255)

     ggctgttctgatataagaagctggtcgcattgggtattcattgcctgatgcgacgcttacgcgtcttatcatgcctacgggaacctgaccgtagGCCGGa                                                                                               <  2:2765121‑M1/6‑1 (MQ=255)

     aaCACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGa                                                                                               <  2:3090545/100‑1 (MQ=255)

      acacGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGAt                                                                                              <  2:1304931/100‑1 (MQ=255)

       cacGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATg                                                                                             >  1:657937/1‑100 (MQ=255)

       cacGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATg                                                                                             >  2:2680207/1‑100 (MQ=255)

          gCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATgcgg                                                                                          >  1:497531/1‑100 (MQ=255)

            cccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATgcggcg                                                                                        <  2:3155232/100‑1 (MQ=255)

            cccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATgcggcg                                                                                        >  2:2392140/1‑100 (MQ=255)

            cccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATgcggcg                                                                                        >  1:2402535/1‑100 (MQ=255)

             ccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgt                                                                                       >  1:2931829/1‑100 (MQ=255)

             ccAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgt                                                                                       >  2:1514845/1‑100 (MQ=255)

              cAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgtg                                                                                      >  1:2121722/1‑100 (MQ=255)

              cAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgtg                                                                                      <  2:2829515/100‑1 (MQ=255)

              cAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgtg                                                                                      >  1:1503863/1‑100 (MQ=255)

                 aaaCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCgtgtta                                                                                   <  1:330262/100‑3 (MQ=255)

                 aaaCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTAc                                                                                   <  2:1219622/100‑1 (MQ=255)

                  aaCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACg                                                                                  <  2:1536549/100‑1 (MQ=255)

                  aaCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACg                                                                                  <  2:1942411/100‑1 (MQ=255)

                  aaCGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACg                                                                                  >  2:3291445/1‑100 (MQ=255)

                    cGTACTTCTGTTGTCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGcc                                                                                <  2:924748/100‑1 (MQ=255)

                    cGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGcc                                                                                >  1:1982198/1‑100 (MQ=255)

                    cGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGcc                                                                                <  2:1582498/100‑1 (MQ=255)

                    cGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGcc                                                                                <  1:454588/100‑1 (MQ=255)

                        cTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTAt                                                                            >  1:1403361/1‑100 (MQ=255)

                          tCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATcc                                                                          <  1:2564647/100‑1 (MQ=255)

                            tGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCgg                                                                        <  1:746838/100‑1 (MQ=255)

                             gTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCTTGTACGCCTTATCCGGc                                                                       <  2:199463/100‑1 (MQ=255)

                             gTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGc                                                                       >  2:2155481/1‑100 (MQ=255)

                             gTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGc                                                                       >  1:69908/1‑100 (MQ=255)

                             gTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATAAGGCGTACACGCCGCATCCGGc                                                                       <  2:1825183/100‑1 (MQ=37)

                               tGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCt                                                                     >  2:2920226/1‑100 (MQ=255)

                                ggCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTa                                                                    >  1:3384915/1‑100 (MQ=255)

                                 gCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTAc                                                                   >  2:1894369/1‑100 (MQ=255)

                                  ttgggtattcattgcctgatgcgacgcttacgcgtcttatcatgcctacgggaacctgaccgtatGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACg                                                                  >  1:3201786‑M1/66‑100 (MQ=255)

                                   gTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACgg                                                                 >  2:402853/1‑100 (MQ=255)

                                     aGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTc                                                               >  1:1593181/1‑100 (MQ=255)

                                       tCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATAAGGCGTACACGCCGCATCCGGcataaacaaag                                                             <  1:936414/100‑11 (MQ=18)

                                        cTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAgg                                                            <  2:3247358/100‑1 (MQ=255)

                                        cTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAgg                                                            >  1:1298319/1‑100 (MQ=255)

                                        cTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAgg                                                            <  2:1699276/100‑1 (MQ=255)

                                        cTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAgg                                                            <  1:347335/100‑1 (MQ=255)

                                        cTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAgg                                                            <  1:1613116/100‑1 (MQ=255)

                                        cTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAgg                                                            >  1:1710283/1‑100 (MQ=255)

                                          gggTTATTGCGCATGTAGGTTTAAAACGCACATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCTTGCACGCTTTATCCGGCCTACGGTCAGGtt                                                          >  1:248132/1‑100 (MQ=25)

                                          gggTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGtt                                                          >  2:2286431/1‑100 (MQ=255)

                                           ggTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTc                                                         >  2:1105747/1‑100 (MQ=255)

                                            gTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCGTACGGTCAGGTTcc                                                        <  1:557293/100‑1 (MQ=255)

                                            gTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTcc                                                        >  2:1710077/1‑100 (MQ=255)

                                              tATTGCGCACTTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCg                                                      <  1:2264824/100‑1 (MQ=255)

                                               aTTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGt                                                     <  2:1419210/100‑1 (MQ=255)

                                                ttGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTa                                                    <  2:1180861/100‑1 (MQ=255)

                                                 tGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAg                                                   <  2:103746/100‑1 (MQ=255)

                                                  gcgcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAgg                                                  >  1:3259581/1‑100 (MQ=255)

                                                   cgcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGc                                                 <  2:838303/100‑1 (MQ=255)

                                                    gcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCa                                                <  2:1335101/100‑1 (MQ=255)

                                                    gcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCa                                                >  1:265295/1‑100 (MQ=255)

                                                    gcACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCa                                                >  1:3784/1‑100 (MQ=255)

                                                     cACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCAt                                               >  1:3329343/1‑100 (MQ=255)

                                                       cGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGa                                             <  1:1894353/100‑1 (MQ=255)

                                                        gTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGAt                                            <  2:460303/100‑1 (MQ=255)

                                                        gTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGAt                                            <  1:2286553/100‑1 (MQ=255)

                                                        gTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGAt                                            <  2:2726121/100‑1 (MQ=255)

                                                         tAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGCTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATa                                           >  1:1855842/1‑100 (MQ=255)

                                                          aGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATaa                                          <  1:2392121/100‑1 (MQ=255)

                                                           ggTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAg                                         >  2:796172/1‑100 (MQ=255)

                                                               tAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCAGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGAcgc                                     >  1:2333028/1‑100 (MQ=255)

                                                                aaaaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGAcgcg                                    <  2:3017453/100‑1 (MQ=255)

                                                                aaaaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGAcgcg                                    <  2:2553641/100‑1 (MQ=255)

                                                                aaaaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGAcgcg                                    <  1:258708/100‑1 (MQ=255)

                                                                  aaCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTa                                  >  1:1921430/1‑100 (MQ=255)

                                                                   aCGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTaa                                 >  2:3333685/1‑100 (MQ=255)

                                                                    cGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAg                                <  1:357703/100‑1 (MQ=255)

                                                                    cGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAg                                >  2:2252328/1‑100 (MQ=255)

                                                                         aTTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCg                           >  2:377286/1‑100 (MQ=255)

                                                                            gTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCAt                        >  2:3063477/1‑100 (MQ=255)

                                                                              aacaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCa                      <  2:165783/100‑1 (MQ=255)

                                                                               acaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAg                     <  2:657941/100‑1 (MQ=255)

                                                                               acaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAg                     >  2:1733330/1‑100 (MQ=255)

                                                                               acaacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAg                     >  1:2995438/1‑100 (MQ=255)

                                                                                 aacGTGCGCTTTGTTTATGCCGGATTCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGc                   <  2:634988/100‑1 (MQ=255)

                                                                                 aacGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGc                   >  1:1139521/1‑100 (MQ=255)

                                                                                   cGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCaa                 >  2:3121300/1‑100 (MQ=255)

                                                                                   cGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCaa                 >  1:2798014/1‑100 (MQ=255)

                                                                                    gTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAAt                <  2:464693/100‑1 (MQ=255)

                                                                                     tGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATg               >  2:541741/1‑100 (MQ=255)

                                                                                     tGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATg               <  2:904926/100‑1 (MQ=255)

                                                                                      gcgcTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGa              <  1:3078739/100‑1 (MQ=255)

                                                                                      gcgcGTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGACAGGTTCTCGTAGGCATGATAAGACGCGTAAGCGTGGCATCAGGCAATg               <  1:59082/99‑1 (MQ=25)

                                                                                           ttGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGTATAATAAGACGCGTAAGCGTCGCACCAGGCAATGAATAcc         <  1:817987/100‑1 (MQ=255)

                                                                                           ttGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATAcc         >  2:320671/1‑100 (MQ=255)

                                                                                           ttGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATAcc         <  1:1317449/100‑1 (MQ=255)

                                                                                           ttGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATAcc         >  1:3048391/1‑100 (MQ=255)

                                                                                              tttATGCCGGATGCGGCGTGTACGCCTTATCCGTCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATAcc         <  1:2745540/97‑1 (MQ=255)

                                                                                                tATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATg    <  2:3384940/100‑1 (MQ=255)

                                                                                                tATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATg    <  2:554877/100‑1 (MQ=255)

                                                                                                  tGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTACCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAAAACCCAATGc   >  1:636897/1‑99 (MQ=255)

GACAAAACACGCCCCAGAAACGTACTTCTGTTGGCGTAGTCTGGGTTATTGCGCACGTAGGTTTAAAACGTAAATTGTAACAACGTGCGCTTTGTTTATGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACGGTCAGGTTCCCGTAGGCATGATAAGACGCGTAAGCGTCGCATCAGGCAATGAATACCCAATGCG  >  NC_000913/3754761‑3754958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.