New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4094320 =NA (NA)9 (0.080) 5/164 NT NA noncoding (5/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
?NC_000913 4094350 = NA (NA)noncoding (35/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences

Only 100 of 226 total aligned reads displayed.

TGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATA  >  NC_000913/4094221‑4094419
                                                                                                   |                                                                                                   
attgattgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattg                                                                                                     >  2:3109659‑M1/100‑100 (MQ=255)
 ggtggCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGc                                                                                                    <  2:2461068/100‑1 (MQ=255)
  tgattgccggatgcggcacaagtgccttatcaggcatacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGcc                                                                                                   >  1:1560011‑M1/98‑100 (MQ=255)
  tccctgccggacgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGcc                                                                                                   >  1:1501230‑M1/98‑100 (MQ=255)
   tggCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCg                                                                                                  <  1:1678840/100‑1 (MQ=255)
   gattgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCg                                                                                                  <  1:2857801‑M1/4‑1 (MQ=255)
   gattgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCg                                                                                                  >  2:2898759‑M1/97‑100 (MQ=255)
     gCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGa                                                                                                >  1:328982/1‑100 (MQ=255)
      tgccggatgcggcacaagtgccttatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCGGAt                                                                                               <  1:567042‑M1/7‑1 (MQ=255)
      cTTTGATCATTCCCTGGACACACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGAt                                                                                               >  2:3249956/1‑100 (MQ=255)
      cTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGAt                                                                                               >  2:567046/1‑100 (MQ=255)
       tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATa                                                                                              <  2:140949/100‑1 (MQ=255)
        ttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATaa                                                                                             <  1:2100891/100‑1 (MQ=255)
        ttGATCATTCCCGGGACAAACCAGGACTGATGAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATa                                                                                              <  2:2017237/99‑1 (MQ=255)
         tGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATCAg                                                                                            >  1:2373692/1‑100 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           <  1:2666638/100‑1 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           <  2:2349814/100‑1 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           >  2:2139951/1‑100 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           >  2:2405358/1‑100 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           >  2:2678497/1‑100 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           >  1:1372139/1‑100 (MQ=255)
          gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAgg                                                                                           <  2:891138/100‑1 (MQ=255)
           aTCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGgc                                                                                          <  2:2581176/100‑1 (MQ=255)
              aTTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCt                                                                                       >  1:3226376/1‑100 (MQ=255)
              aTTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCt                                                                                       >  1:417230/1‑100 (MQ=255)
                 cccTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTcgc                                                                                    >  2:39099/1‑100 (MQ=255)
                  ccTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTcgcg                                                                                   >  1:2303717/1‑100 (MQ=255)
                  ccTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTcgcg                                                                                   >  1:828731/1‑100 (MQ=255)
                  ccTGGACAAACCAGGACTGAGTAATGATTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTcgcg                                                                                   >  2:2112563/1‑100 (MQ=255)
                     ggACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGcgccg                                                                                <  2:1963515/100‑1 (MQ=255)
                     ggACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGcgccg                                                                                <  1:3138438/100‑1 (MQ=255)
                     ggACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGcgccg                                                                                >  2:607761/1‑100 (MQ=255)
                     ggACAAACCAGGACTGAGTAATGTTTTGCAGGTACTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGcgccg                                                                                >  1:2267247/1‑100 (MQ=255)
                        cAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGCGGCGCGAGcgccttat                                                                             <  2:1550660/100‑5 (MQ=255)
                          aaCCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATcc                                                                           >  1:3397256/1‑100 (MQ=255)
                           aCCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCg                                                                          <  2:842575/100‑1 (MQ=255)
                            ccAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCgg                                                                         >  2:2610239/1‑100 (MQ=255)
                             tatcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCGGATAAGGCGCTCGCGCCGCATCCGGc                                                                        >  1:2175755‑M1/71‑100 (MQ=255)
                             cAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGc                                                                        <  1:924729/100‑1 (MQ=255)
                              aGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTCGGCCGGCTAAGGCGATCGCGCCGCATCCgcc                                                                        >  1:1007615/1‑97 (MQ=255)
                              aGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGca                                                                       >  2:3260369/1‑100 (MQ=255)
                               tcaggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCGGATAAGGCGCTCGCGCCGCATCCGGcaa                                                                      >  2:2272776‑M1/69‑100 (MQ=255)
                                caggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCGGATAAGGCGCTCGCGCCGCATCCGGcaat                                                                     >  1:519048‑M1/68‑100 (MQ=255)
                                  ggcctacaggtcggcaatagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatgGCCGGATAAGGCGCTCGCGCCGCATCCGGcaatca                                                                   >  2:1625548‑M1/66‑100 (MQ=255)
                                  cTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaatca                                                                   <  1:3249932/100‑1 (MQ=255)
                                   gcctacaggtcggcattcgtatcaggcctgataagacgcgacagcgtcgcatcaggcattgattGCCGGATAAGGCGCTCGCGCCGCATCCGGcaa                                                                      >  1:163551‑M1/65‑96 (MQ=255)
                                    gAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGcaatcaat                                                                 >  1:637485/1‑100 (MQ=255)
                                     aGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATg                                                                <  1:1316656/100‑1 (MQ=255)
                                      gTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGc                                                               >  1:192843/1‑100 (MQ=255)
                                      gTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGc                                                               >  2:2734897/1‑100 (MQ=255)
                                        aaTGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCt                                                             >  1:2799984/1‑100 (MQ=255)
                                        aaTGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCt                                                             <  2:1699543/100‑1 (MQ=255)
                                          tGTTTTGCATGTTCTGTGTTCGTGTTAATTCGGTGTTGTCGGATCCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTg                                                            <  1:858232/99‑1 (MQ=255)
                                          tGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGa                                                           <  1:2610220/100‑1 (MQ=255)
                                             tttGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGc                                                        >  2:1036774/1‑100 (MQ=255)
                                             tttGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGc                                                        <  2:3286700/100‑1 (MQ=255)
                                                    gTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                 >  1:1183074/1‑100 (MQ=255)
                                                         gtgtTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgcg                                            >  2:1585853/1‑100 (MQ=255)
                                                           gtTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                          <  1:2001373/100‑1 (MQ=255)
                                                           gtTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                          >  1:649208/1‑100 (MQ=255)
                                                           gtTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                          >  2:690307/1‑100 (MQ=255)
                                                              ccTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTa                                       >  2:57890/1‑100 (MQ=255)
                                                                tGTAAATTCGGTGTGGTCGGATGCACTACGCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATTCGACGCTGTCGCGTCTTa                                       <  1:1107588/98‑1 (MQ=21)
                                                                   aaaTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAgg                                  >  1:2410766/1‑100 (MQ=255)
                                                                    aaTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                 >  1:793736/1‑100 (MQ=255)
                                                                    aaTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                 <  2:1114473/100‑1 (MQ=255)
                                                                     aTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGcc                                >  2:198399/1‑100 (MQ=255)
                                                                     aTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGcc                                <  2:3457502/100‑1 (MQ=255)
                                                                     aTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                 <  1:1873380/99‑1 (MQ=255)
                                                                       tCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCt                               <  2:526994/99‑1 (MQ=255)
                                                                         ggTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACa                            >  1:67658/1‑100 (MQ=255)
                                                                           tgttgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAc                          <  1:1805641/100‑1 (MQ=255)
                                                                            gttgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACt                         >  2:649703/1‑100 (MQ=255)
                                                                            gttgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACt                         >  2:2377818/1‑100 (MQ=255)
                                                                               gtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTa                        <  1:745256/98‑1 (MQ=255)
                                                                                tCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCACCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTg                     <  1:539097/100‑1 (MQ=255)
                                                                                  ggATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGcc                   >  1:2486518/1‑100 (MQ=255)
                                                                                   gATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCg                  <  2:1147684/100‑1 (MQ=255)
                                                                                   gATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCg                  <  2:1224098/100‑1 (MQ=255)
                                                                                   gATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTCATCAGGCCTACAACTATTGCCg                  <  1:376474/100‑1 (MQ=255)
                                                                                    aTGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCCACGCTGTCGCGTCTTATCAGGCCTTCAACTATTGCCGa                 <  1:2139678/100‑1 (MQ=255)
                                                                                     tGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGAc                <  1:3455690/100‑1 (MQ=255)
                                                                                       naCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCt              >  1:2947849/2‑100 (MQ=255)
                                                                                       cACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCt              >  1:567900/1‑100 (MQ=255)
                                                                                       cACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCt              >  2:2809776/1‑100 (MQ=255)
                                                                                       cACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCt              >  2:1710435/1‑100 (MQ=255)
                                                                                        aCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTg             <  2:417233/100‑1 (MQ=255)
                                                                                         ccaCCGGTAGGCACGAGAAGGCACTCGCGCTGCATCCGGCAATCACTGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTg             <  1:3035151/97‑1 (MQ=11)
                                                                                         cGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGt            >  1:1823340/1‑100 (MQ=255)
                                                                                           aCCCGTAGGCCGGATAGGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGAcc               <  1:1148631/95‑1 (MQ=255)
                                                                                           aCCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATGAGGCCTACAACTATTGCCGACCTGTAg          >  2:2707441/1‑100 (MQ=255)
                                                                                           aCCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAg          <  1:1585838/100‑1 (MQ=255)
                                                                                             ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGc        >  2:2622531/1‑100 (MQ=255)
                                                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGcc       <  2:2988131/100‑1 (MQ=255)
                                                                                               gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCt      <  2:1325434/100‑1 (MQ=255)
                                                                                               gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCt      >  2:79766/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGAt   >  1:1420594/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGAt   >  2:2124592/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGAt   >  2:2787971/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGAt   >  2:1828623/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATA  >  NC_000913/4094221‑4094419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.