New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2133432 =NA (NA)8 (0.070) 6/164 NT NA noncoding (1/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2133462 = NA (NA)noncoding (31/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 176 total aligned reads displayed.

GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGAT  >  NC_000913/2133363‑2133561
                                                                                                   |                                                                                                   
ggCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                     >  1:113548/1‑100 (MQ=255)
atggctattacgaatacgaatataagtcggatgcgaaataacgacgcctgcattcgcaccgccccgtagGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                     >  2:2489181‑M1/70‑100 (MQ=255)
  cATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGcc                                                                                                     >  2:399377/1‑98 (MQ=255)
    tagaggttGAGATCAGCGGGTTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg                                                                                                 >  1:3281725/7‑100 (MQ=255)
     ataGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgg                                                                                                <  1:759192/100‑1 (MQ=255)
       aGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgggg                                                                                              >  2:1219613/1‑100 (MQ=255)
       aGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgggg                                                                                              >  2:491233/1‑100 (MQ=255)
        gATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGc                                                                                             >  2:697188/1‑100 (MQ=255)
          ttGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCgg                                                                                           <  1:401950/100‑1 (MQ=255)
             agaTCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGc                                                                                        <  2:3303910/100‑1 (MQ=255)
              gaTCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTCGGTGCg                                                                                       >  2:156652/1‑100 (MQ=255)
              gaTCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCg                                                                                       <  1:176970/100‑1 (MQ=255)
              gaTCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCg                                                                                       <  2:2971790/100‑1 (MQ=255)
              gaTCAGCGGATTGTTTTTCATAGGTTGGTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCg                                                                                       <  2:133233/100‑1 (MQ=255)
                  aGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATg                                                                                   >  2:3021532/1‑100 (MQ=255)
                  aGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATg                                                                                   <  2:570856/100‑1 (MQ=255)
                  aGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATg                                                                                   >  2:1970139/1‑100 (MQ=255)
                   gCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGc                                                                                  >  2:2739773/1‑100 (MQ=255)
                    cGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCa                                                                                 >  1:3296756/1‑100 (MQ=255)
                      gATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAgg                                                                               <  2:2467642/100‑1 (MQ=255)
                      gATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAgg                                                                               <  1:1042102/100‑1 (MQ=255)
                        ttGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcg                                                                             <  2:2605059/100‑1 (MQ=255)
                        ttGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcg                                                                             <  2:3304088/100‑1 (MQ=255)
                         tGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcgt                                                                            >  1:2476978/1‑100 (MQ=255)
                          gattttCATCGGTTCATCTCCCGGCTTATGTGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCAGGCCTACGGGGCGGTACGAATGCAgg                                                                               >  1:290590/3‑96 (MQ=25)
                          gTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcgtc                                                                           >  1:2152586/1‑100 (MQ=255)
                          gTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcgtc                                                                           >  1:129856/1‑100 (MQ=255)
                           tttttCATAGGTTGTTCTCCCGGCTTATGAGCTGGTGTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcgtcg                                                                          <  2:1238029/100‑1 (MQ=255)
                            ttttCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGcgtcgt                                                                         >  1:705247/1‑100 (MQ=255)
                             tttCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGtt                                                                        <  2:1992175/100‑1 (MQ=255)
                                  tAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTc                                                                   >  2:628249/1‑100 (MQ=255)
                                    ggTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGc                                                                 >  2:2152514/1‑100 (MQ=255)
                                    ggTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGc                                                                 >  1:1043040/1‑100 (MQ=255)
                                    ggTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGc                                                                 >  1:876840/1‑100 (MQ=255)
                                    ggTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGc                                                                 <  1:338176/100‑1 (MQ=255)
                                    ggTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGc                                                                 >  1:2587368/1‑100 (MQ=255)
                                     gttgttCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCa                                                                <  2:2841557/100‑1 (MQ=255)
                                     gttgttCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCa                                                                >  1:55020/1‑100 (MQ=255)
                                      ttgttCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCAt                                                               <  1:2077598/100‑1 (MQ=255)
                                       tgttCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATc                                                              >  1:3439447/1‑100 (MQ=255)
                                       tgttCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATc                                                              <  2:2072807/100‑1 (MQ=255)
                                         ttCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCg                                                            >  2:1756636/1‑100 (MQ=255)
                                           ctcCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGAc                                                          >  2:3073871/1‑100 (MQ=255)
                                           ctcCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTAGTTCGCATCCGAc                                                          <  2:2269621/100‑1 (MQ=255)
                                             tccGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACtt                                                        <  2:714897/99‑1 (MQ=255)
                                             cccGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACtt                                                        >  2:3237134/1‑100 (MQ=255)
                                              ccGGCTTATGAGCTGGTTTGCTTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTta                                                       >  2:2888954/1‑100 (MQ=255)
                                                  cTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtatt                                                   >  2:1445782/1‑100 (MQ=255)
                                                    tATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcg                                                 <  1:1205543/100‑1 (MQ=255)
                                                    tATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcg                                                 <  2:3007574/100‑1 (MQ=255)
                                                     aTGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcgt                                                <  2:2265706/100‑1 (MQ=255)
                                                       gcaccgccccgtaggccggataaggcgttcacgccgcatccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcgtat                                              >  2:726922‑M2/45‑100 (MQ=255)
                                                       gAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcgtat                                              >  2:1366555/1‑100 (MQ=255)
                                                        aGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcgtatt                                             >  2:3401136/1‑100 (MQ=255)
                                                          cTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcgtattcg                                           <  1:1986834/100‑1 (MQ=255)
                                                           tGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATattcgtattcgt                                          <  1:156651/100‑1 (MQ=255)
                                                             gTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTaa                                        >  2:2695431/1‑100 (MQ=255)
                                                             gTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTaa                                        >  2:1901383/1‑100 (MQ=255)
                                                                 gcttgcCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGc                                    >  2:1952953/1‑100 (MQ=255)
                                                                  cttgcCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGcc                                   >  2:2513410/1‑100 (MQ=255)
                                                                  cttgcCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGcc                                   >  1:2183493/1‑100 (MQ=255)
                                                                  cttgcCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGcc                                   >  1:3115780/1‑100 (MQ=255)
                                                                   ttgcCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCa                                  >  2:3034179/1‑100 (MQ=255)
                                                                    ggccggataaggcgttcacgccgcatccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCAt                                 >  2:2489181‑M2/32‑100 (MQ=255)
                                                                     gccggataaggcgttcacgccgcatccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATa                                >  1:1760036‑M2/31‑100 (MQ=255)
                                                                      ccggataaggcgttcacgccgcatccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATaa                               >  1:2091891‑M2/30‑100 (MQ=255)
                                                                      CCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATaa                               >  1:2739752‑M1/1‑100 (MQ=255)
                                                                       cggataaggcgttcacgccgcatccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATaa                               >  1:2832032‑M2/29‑99 (MQ=255)
                                                                       cggataaggcgttcacgccgcatccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAAt                              >  1:1494525‑M2/29‑100 (MQ=255)
                                                                        GGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATc                             >  1:29606‑M1/1‑100 (MQ=255)
                                                                         GATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATcc                            >  1:53349‑M1/1‑100 (MQ=255)
                                                                         GATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATcc                            <  2:600089‑M1/100‑1 (MQ=255)
                                                                           TGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTg                          >  1:491229‑M1/1‑100 (MQ=255)
                                                                           TGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTGATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTg                          >  1:1915975‑M1/1‑100 (MQ=255)
                                                                            gcggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGa                         <  1:1821026/100‑1 (MQ=255)
                                                                            gcggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGa                         <  2:145647/100‑1 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTg                          >  1:515438/1‑98 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGAt                        <  2:113548/100‑1 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGAt                        >  2:168160/1‑100 (MQ=255)
                                                                             cggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGAt                        <  1:2349133/100‑1 (MQ=255)
                                                                              gtcgTTAACGCCTTTTCCGGCCTACGCGGCGGTGTGAAGGCAGGCTTCGTTATTTCACATCCGACTTATCTTCTTATTCGTAATAGCCATAATCCt                           <  1:462465/94‑1 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATa                       >  1:1789609/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATa                       >  1:2938701/1‑100 (MQ=255)
                                                                              ggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATa                       <  2:3439475/100‑1 (MQ=255)
                                                                                   gAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGCCTTATATTCGTATTCGTAATAGCCATAATCCTGATACgcgc                  >  1:314590/1‑100 (MQ=255)
                                                                                     aCGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTg                >  2:2362773/1‑100 (MQ=255)
                                                                                     aCGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTg                >  1:2323199/1‑100 (MQ=255)
                                                                                       gCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGgc              >  1:1240396/1‑100 (MQ=255)
                                                                                        ccTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGgcg             >  1:632772/1‑100 (MQ=255)
                                                                                           tATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCgcgg          >  1:735711/1‑100 (MQ=255)
                                                                                            atccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTCATTTCGCATCCGACTTATATTCGTATTCTTAATAGCCATAATCCTGATACGCGCTGGCgcggc         <  2:36493‑M2/93‑1 (MQ=255)
                                                                                             tccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCgcggcg        <  2:281787‑M2/94‑1 (MQ=255)
                                                                                             tccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCgcggcg        <  2:2646729‑M2/94‑1 (MQ=255)
                                                                                              ccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGcggcgg       <  1:42882‑M2/95‑1 (MQ=255)
                                                                                               cggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGa      >  1:1578705‑M2/5‑100 (MQ=255)
                                                                                               cggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGa      >  1:3305904‑M2/5‑100 (MQ=255)
                                                                                               cggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGa      >  2:1733064‑M2/5‑100 (MQ=255)
                                                                                                ggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGaa     >  2:1083010‑M2/4‑100 (MQ=255)
                                                                                                  cCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGa   >  2:2945855‑M2/2‑100 (MQ=255)
                                                                                                   cTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGAt  <  1:1258534/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGAT  >  NC_000913/2133363‑2133561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.