New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4035360NA (NA)16 (0.130) 8/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4035285‑4035483
                                                                                                   |                                                                                                   
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  1:1118518‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  2:2386010‑M2/1‑100 (MQ=255)
tcCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     <  2:851421‑M2/100‑1 (MQ=255)
   tGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGCATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                     >  1:534717‑M2/1‑97 (MQ=255)
                                                   ggAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttattttt                                                  <  2:2548822‑M2/100‑52 (MQ=255)
                                                       agcGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctt                                              <  1:2049358‑M2/99‑56 (MQ=255)
                                                         cGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttc                                            <  2:895987‑M2/100‑58 (MQ=255)
                                                                  cacaCCCCGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggcgtgcataatacgccttcccgctacacagacaagcatttatttttgctttctctgtc                                      <  1:2761927‑M2/97‑64 (MQ=255)
                                                                      ccccGCGCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttc                               <  1:2100132‑M2/100‑71 (MQ=255)
                                                                         cgcgCCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatatgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctca                            <  2:138631‑M2/100‑74 (MQ=255)
                                                                         cgcgCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctca                            <  2:2094371‑M2/100‑74 (MQ=255)
                                                                         cgcgCCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctca                            <  1:1616019‑M2/100‑74 (MQ=255)
                                                                          gcgcCGCTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcag                           <  1:1624135‑M2/100‑75 (MQ=255)
                                                                          gcgcCGCTGAGAAAAAGCAAAGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcag                           <  1:375484‑M2/100‑75 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                          <  2:2636023‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                          <  1:566299‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcagg                          <  2:2001802‑M2/100‑76 (MQ=255)
                                                                           cgccgcTGAGAAAAAGCAACGCGGCgcggggtgtgcataatacgctttcccgctacagagtcaagcatttatttttgctttctctgccgcagatctcag                           <  1:2801968‑M2/99‑75 (MQ=255)
                                                                            gccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccgtagttctcagga                         <  1:1238760‑M2/100‑77 (MQ=255)
                                                                             ccgcTGAGAAAAAGCGAAGCGGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggag                        <  1:433352‑M2/100‑78 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggc       >  2:935278‑M2/1‑6 (MQ=255)
                                                                                              agcgGCgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgccgacccggc       <  1:1221621‑M2/100‑95 (MQ=255)
                                                                                               gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcg      <  1:979833‑M2/100‑96 (MQ=255)
                                                                                               gcggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcg      <  1:425606‑M2/100‑96 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     >  2:1728925‑M2/1‑4 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     >  2:3109819‑M2/1‑4 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcgg     >  2:791036‑M2/1‑4 (MQ=255)
                                                                                                cggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcg      >  1:2849686‑M2/1‑4 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc    <  2:1869057‑M2/100‑98 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc    >  2:2473669‑M2/1‑3 (MQ=255)
                                                                                                 ggcgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggc    <  1:3173860‑M2/100‑98 (MQ=255)
                                                                                                   cgcggggtgtgcataatacgccttcccgctacagagtcaagcatttatttttgctttctctgccggagttctcaggagaaccccgctgacccggcggcgt  >  1:2814947‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
TCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTG  >  NC_000913/4035285‑4035483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.