New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2701274	95 (0.870)	6 (0.070) +GTGGACGCCGTATCATTAAAAAAAAA	6/146	10.7	8.3%	coding (456/732 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
	?	NC_000913	2701301 =	85 (0.780)					coding (429/732 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2701212‑2701274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCC  >  NC_000913/2701301‑2701361                                                                ||||||||||||||||||||||||||                                                              GCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGCTTTGATCT                                                    >  2:1621082/1‑100                                 GGCATCAGCATAGCAACCGGTGTAGATCTCGGTGGACGCCGTATCATTAAAAAAAAAAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACC                    >  2:1821261/1‑100                                  GCATCAGCATAGCAACCGGTGTAGATCTCGGTGGACGCCGTATCATTAAAAAAAAAAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCT                   >  2:539965/1‑100                                    ATCAGCATAGCAACCGGTGTAGATCTCGGTGGACGCCGCATCAATAAAAAAAAAAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGA                 >  2:1103327/1‑100                                        GCATAGCAACCGGTGTAGATCTCGGTAGACGCCGCATCATTAAAAAAAACAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCC             >  2:2415727/1‑100                                                   GGTGTAGATCTCGGTGGACGCCGTATCATTCAAAGACGCAGCTTTGATCTGCTCTTCATCGTCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCC  >  2:456269/1‑100                                                                ||||||||||||||||||||||||||                                                              GCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2701212‑2701274 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCC  >  NC_000913/2701301‑2701361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.