| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2701274 | 95 (0.870) | 6 (0.070) +GTGGACGCCGTATCATTAAAAAAAAA |
6/146 | 10.7 | 8.3% | coding (456/732 nt) | pdxJ | pyridoxine 5'‑phosphate synthase |
| ? | NC_000913 | 2701301 = | 85 (0.780) | coding (429/732 nt) | pdxJ | pyridoxine 5'‑phosphate synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GGCGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGCTGCCC > NC_000913/2701202‑2701399 | ggCGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCa > 2:2548775/1‑100 (MQ=255) gCGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAg > 1:2100045/1‑100 (MQ=255) cGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGc < 2:831479/100‑1 (MQ=255) cGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGc < 1:1340817/100‑1 (MQ=255) cGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGc > 1:1579400/1‑100 (MQ=255) gATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCt < 2:579571/100‑1 (MQ=255) gATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCt < 1:1699773/100‑1 (MQ=255) gATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAACAACCGGTGTGGATCTCGATGAACGGCGCGCCAACCTCTGCCGCAGCt > 2:455132/1‑100 (MQ=255) tACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCttt < 2:1945226/100‑1 (MQ=255) tACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCttt < 2:2012140/100‑1 (MQ=255) aCGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTg < 1:573903/100‑1 (MQ=255) gcgcCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGan < 1:2080166/100‑2 (MQ=255) gcgcCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCAGCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGAt < 1:931856/100‑1 (MQ=255) cgcCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAATCGGTGCGCCAACCTCTGCCGCAGCTTTGATc < 2:435356/100‑1 (MQ=255) cgcCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATc < 1:2061693/100‑1 (MQ=255) ccAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTg > 1:122502/1‑100 (MQ=255) cAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAATGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGc < 2:1658229/100‑1 (MQ=255) gCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGctc < 1:1691521/100‑1 (MQ=255) gCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGctc > 1:952280/1‑100 (MQ=255) ctctTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGctct < 2:2765556/100‑1 (MQ=255) tctTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCtt < 1:1881114/100‑1 (MQ=255) ctTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTc < 2:1579388/100‑1 (MQ=255) tGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCAt > 1:2406160/1‑100 (MQ=255) tGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCAt < 1:620646/100‑1 (MQ=255) cgcCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCg > 1:194185/1‑100 (MQ=255) gcCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCgg < 1:243820/100‑1 (MQ=255) gcCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCgg < 1:278119/100‑1 (MQ=255) tGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGt > 1:1141529/1‑100 (MQ=255) gTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTc < 1:756121/100‑1 (MQ=255) ttCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCa < 2:2436817/100‑1 (MQ=255) ttCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCa < 1:2142211/100‑1 (MQ=255) cGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAAt < 2:1566442/100‑1 (MQ=255) gCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATaa > 1:2578872/1‑100 (MQ=255) gTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAAc < 1:2653224/100‑1 (MQ=255) gTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAAc < 2:33785/100‑1 (MQ=255) cAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACag < 2:621833/100‑1 (MQ=255) ttttGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAgaga < 2:1034338/100‑1 (MQ=255) ggCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAAcc < 1:465914/100‑1 (MQ=255) cAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGaa < 2:2511162/99‑1 (MQ=255) cAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAAt > 1:2371662/1‑100 (MQ=255) cATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATccc < 1:276630/100‑1 (MQ=255) aTAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCg < 1:2548794/100‑1 (MQ=255) tAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCgg < 1:828380/100‑1 (MQ=255) tAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCgg < 2:1733709/100‑1 (MQ=255) tAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCgg < 2:365280/100‑1 (MQ=255) gCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCa < 1:221552/100‑1 (MQ=255) gCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCa > 1:2757226/1‑100 (MQ=255) gCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCa < 2:627577/100‑1 (MQ=255) gCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCa < 2:68589/100‑1 (MQ=255) ngtgtAGATCTCGGTAAACGGTGCGCCATCATCTGACGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGcc > 2:76212/2‑100 (MQ=255) ggTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGcc < 1:1849936/100‑1 (MQ=255) ggTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGcc > 1:2548280/1‑100 (MQ=255) ggTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGcc < 1:76213/100‑1 (MQ=255) gtgtGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCa < 2:2488718/100‑1 (MQ=255) gtgtGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCAGCATCTGCCa < 2:1378898/100‑1 (MQ=255) tgtgGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAg < 2:1495087/100‑1 (MQ=255) gtgGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGa > 2:1428870/1‑100 (MQ=255) gtgGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGa > 1:2419265/1‑100 (MQ=255) gtgGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGa < 1:1199541/100‑1 (MQ=255) gtgGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGa < 1:436366/100‑1 (MQ=255) gATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGt > 2:1765400/1‑100 (MQ=255) tcGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGc < 2:2003598/100‑1 (MQ=255) cGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCa > 1:350907/1‑100 (MQ=255) gATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAg > 2:527647/1‑100 (MQ=255) gATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAg < 1:1519436/100‑1 (MQ=255) aTAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGatcggaagagc > 1:2704610/1‑90 (MQ=255) tAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGATCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGc > 2:1481478/1‑100 (MQ=255) aaCGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCAt > 1:2447144/1‑100 (MQ=255) cGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATcg < 2:1710433/100‑1 (MQ=255) gcgcCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCa > 1:1429621/1‑100 (MQ=255) cgcCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCAt > 2:331486/1‑100 (MQ=255) ccAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCAttt > 2:18314/1‑100 (MQ=255) ccAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCAttt > 2:2199511/1‑100 (MQ=255) cAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCAtttt < 2:430031/100‑1 (MQ=255) aaCCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTg > 2:448629/1‑100 (MQ=255) aaCCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTg < 1:46741/100‑1 (MQ=255) ccTCTGCCGCAGCTTTGATCTGCGCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTg < 2:935285/98‑1 (MQ=255) ctctGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCa < 2:550504/100‑1 (MQ=255) tctGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCAc < 2:1141522/100‑1 (MQ=255) ctGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACg > 2:2605352/1‑100 (MQ=255) tGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGc < 1:1357603/100‑1 (MQ=255) tGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGc > 2:788910/1‑100 (MQ=255) ccGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGCTg < 2:122500/100‑1 (MQ=255) cGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGCTGc < 1:1129869/100‑1 (MQ=255) cAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGCTGccc < 2:644716/100‑1 (MQ=255) | GGCGATACGCGCCAGCTCTTGCGCCTGTTCGGCGTCAGTTTTGGCATCAGCATAGCAACCGGTGTGGATCTCGATAAACGGTGCGCCAACCTCTGCCGCAGCTTTGATCTGCTCTTCATCGGCGTCAATAAACAGAGAAACCTGAATCCCGGCATCTGCCAGACGTTTGCAGGCATCGCGCATTTTGTCACGCTGCCC > NC_000913/2701202‑2701399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |