New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1269306 =	85 (0.820)	16 (0.170)	4/162	NT	20.6%	intergenic (‑31/+397)	ldrA/ldrB	toxic polypeptide, small/toxic polypeptide, small
	?	NC_000913	1270354 =	46 (0.490)					intergenic (‑9/+395)	ldrC/chaA	toxic polypeptide, small/calcium/sodium:proton antiporter

CTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1269412‑1269306 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGG  >  NC_000913/1270354‑1270452                                                                                                                                                                                                                 CTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAA                                                                                                            <  1:660886/100‑1  TGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAAT                                                                                                           <  2:2581090/100‑1    GTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAG                                                                                                         <  2:1165340/100‑1    GTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAG                                                                                                         <  2:1535641/100‑1      GGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCC                                                                                                       <  2:81965/100‑1      GGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCC                                                                                                       <  1:1907357/100‑1      GGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCC                                                                                                       <  1:2079361/100‑1      GGCATTGGTTGCCGGAAAGAGGAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGTGGCTAATCTGG‑AACCAGAACAATCCAAGAATAGCC                                                                                                       >  1:337484/1‑100       GCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCG                                                                                                      <  1:2269105/100‑1       GCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCG                                                                                                      <  1:2466515/100‑1        CATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGC                                                                                                     >  2:683381/1‑100         ATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGCACAACCTGACAACAGAACGGGGGCTAATCTTG‑CACCCGAACAATTCAAGAATAGCCGC                                                                                                     >  1:1219227/1‑99                                      ACGTTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTAT                                                                       <  2:1337253/100‑1                                       CGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTAT                                                                       <  1:233571/99‑1                                         TTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCT                                                                    <  2:2775641/100‑1                                         TTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCT                                                                    <  2:486159/100‑1                                         TTGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCT                                                                    <  1:1821462/100‑1                                          TGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  1:1246560/100‑1                                          TGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  2:2392592/100‑1                                          TGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  2:2375075/100‑1                                          TGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  1:2620289/100‑1                                          TGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTC‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  1:2042638/100‑1                                          TGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  1:431991/100‑1                                          TGAGAGGTAAAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  1:2017111/100‑1                                          TGAGAGGTAAAACCTGACAACAAAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTT                                                                   <  1:806524/100‑1                                           GAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTG                                                                  <  1:405081/100‑1                                                gtaaAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG                                                             <  1:532600/96‑1                                                gtaaAACCTGACAACAGAACGGGGGCTAATCTTGAAACCAG‑ACACTTCAAGAATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTG                                                             <  2:2492533/96‑1                                                                                                     ATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGT         >  2:2597019/1‑100                                                                                                      TAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTG        >  1:1406422/1‑100                                                                                                      TAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTG        >  2:1343240/1‑100                                                                                                       AGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGC       <  1:2575543/100‑1                                                                                                        GCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCG      >  1:2243040/1‑100                                                                                                        GCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCG      >  2:1760510/1‑100                                                                                                        GCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCG      >  1:1543300/1‑100                                                                                                         CCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGG     >  1:246439/1‑100                                                                                                          CGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG    <  2:2008124/100‑1                                                                                                          CGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGG    <  2:2887737/100‑1                                                                                                            CCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGG  <  1:543404/100‑1                                                                                                            CCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGG  <  1:607838/100‑1                                                                                                                                                                                                                 CTGGTGGCATTGGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAACAGAACGGGGGCTAATCTTG‑AACCAGAACAATTCAAGAATAGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1269412‑1269306 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGG  >  NC_000913/1270354‑1270452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.