| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1269306 = | 85 (0.820) | 16 (0.170) | 4/162 | NT | 20.6% | intergenic (‑31/+397) | ldrA/ldrB | toxic polypeptide, small/toxic polypeptide, small |
| ? | NC_000913 | 1270354 = | 46 (0.490) | intergenic (‑9/+395) | ldrC/chaA | toxic polypeptide, small/calcium/sodium:proton antiporter | |||||
CCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGT > NC_000913/1270284‑1270453 | acgttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTAt < 2:1337253‑M2/30‑1 (MQ=255) cgttgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTAt < 1:233571‑M2/30‑1 (MQ=255) ttgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCt < 2:486159‑M2/33‑1 (MQ=255) ttgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCt < 2:2775641‑M2/33‑1 (MQ=255) ttgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCt < 1:1821462‑M2/33‑1 (MQ=255) tgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 2:2375075‑M2/34‑1 (MQ=255) tgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 1:2620289‑M2/34‑1 (MQ=255) tgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 1:1246560‑M2/34‑1 (MQ=255) tgagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 2:2392592‑M2/34‑1 (MQ=255) tgagaggtacaacctgacaacagaacgggggctaatcttcaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 1:2042638‑M2/34‑1 (MQ=255) tgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 1:2017111‑M2/34‑1 (MQ=255) tgagaggtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 1:431991‑M2/34‑1 (MQ=255) tgagaggtaaaacctgacaacaaaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCtt < 1:806524‑M2/34‑1 (MQ=255) gagaggtacaacctgacaacagaacgggggctaatcttgaaccagaacaattcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTg < 1:405081‑M2/35‑1 (MQ=255) gATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAg < 2:2013350/100‑1 (MQ=11) gATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAg < 2:2011252/100‑1 (MQ=11) tCGGTGCTGCCAGGTCGTGCCAGAAAATCAAGGAAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTAGTCTTGAAgtg > 1:1916063/1‑100 (MQ=255) gtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAgtg < 2:2492533‑M2/40‑1 (MQ=255) gtaaaacctgacaacagaacgggggctaatcttgaaaccagacacttcaagaatagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAgtg < 1:532600‑M2/40‑1 (MQ=255) cGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACACCATTTTGCGGCTATTCTTGAAgtgt > 1:2191750/1‑100 (MQ=17) ggTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTc > 2:1805792/1‑100 (MQ=35) tgctgcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTg < 1:1039197/100‑1 (MQ=35) tgctgcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTg < 1:2841479/100‑1 (MQ=38) gcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGttt > 1:2476589/1‑100 (MQ=33) gcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGttt < 1:1502282/100‑1 (MQ=33) gcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGttt > 2:2391243/1‑100 (MQ=33) gcCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGttt < 1:2358875/100‑1 (MQ=33) ccAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAGTGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGttt < 1:1803792/99‑1 (MQ=17) cAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCa < 1:372723/100‑1 (MQ=33) aGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCaa < 2:2142966/100‑1 (MQ=33) aGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCaa < 1:1709334/100‑1 (MQ=32) ggTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAg > 1:2466057/1‑100 (MQ=33) ggTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAg > 1:2532650/1‑100 (MQ=33) gTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCTTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGa < 2:41761/100‑1 (MQ=18) gCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGCCAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGc < 1:707861/100‑1 (MQ=17) ccAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGcc < 1:217100/100‑1 (MQ=33) cAGAAAATCATGGCCAACTGCGCCAGCGACATATAGCCGCCTTGTTGTAATGACCACATATTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGc > 1:278255/1‑98 (MQ=11) cAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGccc > 2:237874/1‑100 (MQ=33) aGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGcccc > 2:2617836/1‑100 (MQ=33) gAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGccccc > 2:2258239/1‑100 (MQ=32) gAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGccccc < 2:379574/100‑1 (MQ=32) aaTCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGtt > 1:1167037/1‑100 (MQ=31) aTCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGttt > 2:744677/1‑100 (MQ=31) tCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGtttt < 1:2630213/100‑1 (MQ=31) aTGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTttgt > 1:1869747/1‑100 (MQ=33) aTGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTttgt < 1:2564633/100‑1 (MQ=32) aTGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTttg < 1:176261/99‑1 (MQ=32) tGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTttgtt < 1:1602975/100‑1 (MQ=32) ggCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTttgttg > 2:1111797/1‑100 (MQ=33) ggCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTttgttg > 2:2658266/1‑100 (MQ=32) gCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTtgttgt < 2:2022401/100‑1 (MQ=33) gCAAACTGCGCGAGCGTCATATAGCCGCCTTGTGGTAATGCCAACAGTTTGCGGCTGTTCTTGCAGTGTTTGGCTTGAAGATTAGCTACCGTTttgttg > 1:1429918/1‑99 (MQ=11) cAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTc < 2:433048/100‑1 (MQ=33) cAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTc < 2:1224617/100‑1 (MQ=33) aaaCTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCa < 1:668012/100‑1 (MQ=33) aaaCTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCa < 2:1463453/100‑1 (MQ=33) tGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGtt < 2:2120566/100‑1 (MQ=32) tGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGtt > 2:2441443/1‑100 (MQ=32) cgcgAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGtttt < 2:1185002/100‑1 (MQ=33) gcgAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTa < 2:367313/100‑1 (MQ=33) cgAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTAc < 2:2529689/100‑1 (MQ=33) cgAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTAc > 1:2334224/1‑100 (MQ=33) cATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCaa < 2:897241/100‑1 (MQ=33) cATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCaa > 2:1142395/1‑100 (MQ=32) tataGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACg > 2:607841/1‑100 (MQ=33) tataGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACg < 2:1031960/100‑1 (MQ=33) atagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGt > 2:2597019‑M2/9‑100 (MQ=255) tagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTg > 1:1406422‑M2/8‑100 (MQ=255) tagccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTg > 2:1343240‑M2/8‑100 (MQ=255) agccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGc < 1:2575543‑M2/94‑1 (MQ=255) gccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCg > 1:2243040‑M2/6‑100 (MQ=255) gccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCg > 1:1543300‑M2/6‑100 (MQ=255) gccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCg > 2:1760510‑M2/6‑100 (MQ=255) ccgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCgg > 1:246439‑M2/5‑100 (MQ=255) cgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCggg < 2:2887737‑M2/97‑1 (MQ=255) cgcCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCggg < 2:2008124‑M2/97‑1 (MQ=255) cCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAATTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCggggg < 1:543404‑M2/99‑1 (MQ=255) cCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCggggg < 1:607838‑M2/99‑1 (MQ=255) cTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGt < 2:1836833/100‑1 (MQ=33) | CCCGCCAGGATCGGTGCTGCCAGGTCGTGCCAGAAAATCATGGCAAACTGCGCGAGCGTCATATAGCCGCCTTGTTGTAATGACAACATTTTGCGGCTATTCTTGAAGTGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGT > NC_000913/1270284‑1270453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |