| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3227693 = | 99 (0.950) | 15 (0.170) | 10/156 | NT | 15.3% | intergenic (+26/‑108) | ygjI/ygjJ | putative transporter/putative periplasmic protein |
| ? | NC_000913 | 3227727 = | 80 (0.880) | intergenic (+60/‑74) | ygjI/ygjJ | putative transporter/putative periplasmic protein | |||||
GTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3227799‑3227693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagggaaaatAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCA > NC_000913/3227727‑3227825 GTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAGAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAG > 1:287950/1‑100GTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAG < 1:2732915/100‑1GTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAG < 1:2002759/100‑1 GTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGG < 2:2196818/100‑1 GTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGG > 1:871931/1‑100 GTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGG > 1:2292656/1‑100 TTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAtcgg > 2:884090/1‑96 TAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGCAAGAGGGAA > 1:2462799/1‑100 AATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAA > 2:433807/1‑100 AATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAA > 2:1329988/1‑100 AATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAA < 2:1411658/100‑1 AATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAA > 2:2278273/1‑100 ATCCATGAGCTAAAGAAAAAGTAGAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAA > 2:2471222/1‑100 TCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAAT > 1:724677/1‑100 TCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAAT < 2:38831/100‑1 GGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTT > 1:688037/1‑100 CAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAG > 2:1352941/1‑100 ACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCAT > 1:152400/1‑100 CTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATACTTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCAT > 1:687929/1‑99 CTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCAT > 1:507450/1‑99 TTTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTCAAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGAT > 1:1465749/1‑99 TTCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTA > 2:1385812/1‑100 TTCACTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGCATTA > 1:1379880/1‑100 TCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAA > 2:1374407/1‑100 TCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAA > 2:161678/1‑100 TCCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAACGCTTTACTTTTTCTTTAGCTCCTGGATTAA > 1:2443775/1‑100 CCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTTCTTCGATAAAAGGCTGTACTTTTTTTTTTGCTCATTGTTTAA > 1:758858/1‑99 CCCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAACGGCTGTACTTTTTCTTTAGCTCATGGATTAA > 1:2574502/1‑99 CCTCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACA > 2:325637/1‑100 TCTCCTCATCCAGGAAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTTTTTATCTCATGGATTAACACA > 1:1139324/1‑100 AGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACT < 2:319859/100‑1 GAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTG < 2:540145/100‑1 AGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGC < 2:1998539/100‑1 GGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTATCTCATGGATTAACACAATGAAATTAATCACTGCA > 1:309429/1‑100 GGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCA > 1:336353/1‑100 GGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCA < 2:2759073/100‑1 GAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACC < 1:482518/100‑1 AAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACC < 1:177228/99‑1 AAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAACGCTGTACTTTTTCTTTAGCTCATGCATTAACACAATGAAATTAATC < 1:2531553/91‑1 AAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCAT > 2:2902094/1‑100 ATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAATAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGC < 2:2658321/100‑1 ATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGC < 1:2424142/100‑1 ATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGC < 2:365593/100‑1 ATAGTTTCTGCCTTTATATTTTTATAATTACAACAATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGC < 1:869706/100‑1 TAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCA < 1:1913326/100‑1 GTGTTAATCCATGAGCTAAAGAAAAAGTACAGCCTTTTATCGTTGTAATTATAAAAATATAAAGGCAGAAACTATTTTCCCTCTCCTCATCCAGGAAGAGGGAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3227799‑3227693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagggaaaatAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCA > NC_000913/3227727‑3227825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |