New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 453413997 (0.930)15 (0.160) 7/158 NT 14.6% intergenic (‑86/+291) yjhX/yjhZ UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
?NC_000913 = 4534160 89 (0.970)intergenic (‑107/+270) yjhX/yjhZ UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
Rejected: Frequency below cutoff threshold.

TGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4534031‑4534139
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataatcagtTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGG  <  NC_000913/4534160‑4534063
                                                                                                                                                                                                               
TGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTG                                                                                                             <  2:1872481/100‑1
  TTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                           <  2:2067441/100‑1
  TTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                           <  2:2067411/100‑1
    CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                         >  2:245601/1‑100
    CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCAGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                         <  1:2527528/100‑1
      TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                       >  1:1250043/1‑100
      TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                       >  2:816808/1‑100
      TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                       <  2:60691/100‑1
      TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                       <  2:2500225/100‑1
      TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                       <  2:2165823/100‑1
      TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                       <  2:2117181/100‑1
       GACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                      >  2:2848915/1‑100
       GACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                      >  2:277098/1‑100
        ACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACCCACCGCGGTGTCCGCATTCGATTTCGGCTCATTGATAATCtg                                                                                                     <  2:1965925/100‑3
                                     TTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATT                                                                        <  2:504501/100‑1
                                     TTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑CCGACCTTTTCAGGCCGGACTGATTATC                                                                     <  2:1451291/100‑1
                                        ATCATCATGTGCAATACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCAGTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                     <  1:1833030/100‑1
                                        ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTT‑‑‑CGACCTTTTCAGGCCGGACTGATTATC                                                                     <  1:1047447/97‑1
                                          CATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAA                                                                   <  1:2212586/100‑1
                                           ATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAAT                                                                  <  2:820387/100‑1
                                            TCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  1:1597426/100‑1
                                            TCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  2:2606580/100‑1
                                            TCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  1:838977/100‑1
                                            TCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  1:2916722/100‑1
                                             CATGTGCAAAACGTGCAAACACACCTCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  2:884182/99‑1
                                             CATGTGCAAAACGTGCAAACACACCGCGGTTTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGC                                                                <  1:1434121/100‑1
                                             CATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  1:1471769/99‑1
                                                 TGCAAAACGTGCAAACATACCGCTGTGTCCTCATTCGATTTCGGCTCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATG                                                                 <  1:1471757/95‑1
                                                                          TGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑CCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTT                                >  2:2812465/1‑100
                                                                                                      AATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAA       >  2:2317754/1‑100
                                                                                                      AATCAGTCCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAA       >  2:2441572/1‑100
                                                                                                       ATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAA      >  2:2224721/1‑100
                                                                                                       ATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAA      >  1:557577/1‑100
                                                                                                         CAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATA    <  1:2556685/100‑1
                                                                                                         CAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATA    >  1:2417600/1‑100
                                                                                                          AGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAG   >  1:165163/1‑100
                                                                                                           GTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGG  <  2:958236/100‑1
                                                                                                                                                                                                               
TGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4534031‑4534139
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataatcagtTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGG  <  NC_000913/4534160‑4534063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.