New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4040481 | NA (NA) | 67 (0.690) | 13/166 | NT | 100% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
? | NC_000913 | = 4040505 | 0 (0.000) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG > NC_000913/4040401‑4040580 | aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 2:2382017‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:744238‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:519171‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 2:221616‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 2:1993995‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:2531353‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 1:2216937‑M2/100‑1 (MQ=255) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT < 2:852710‑M2/100‑1 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 1:382512‑M2/1‑100 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 1:1305121‑M2/100‑1 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 1:2902495‑M2/100‑1 (MQ=255) tGACCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTCATACAGATTAAATCAGAACGCAGAAGCGGTCT > 2:2764520‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGCTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 2:1734314‑M2/99‑1 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGACGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:319552‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 2:677776‑M2/100‑1 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 2:1858725‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:476442‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 1:1091981‑M2/100‑1 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 2:1999361‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:1776714‑M2/1‑100 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 2:1737313‑M2/100‑1 (MQ=255) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 2:1261794‑M2/100‑1 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCCGAACGCAGAAGCGGTCTG < 2:634967‑M2/100‑1 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG > 1:1132844‑M2/1‑100 (MQ=255) gAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTGTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG > 1:1701821‑M2/1‑100 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTta > 2:2705476‑M2/1‑98 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:908887‑M2/1‑100 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 1:803351‑M2/1‑100 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 2:1001208‑M2/1‑100 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA < 1:1238168‑M2/100‑1 (MQ=255) aaCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGA > 2:457710‑M2/1‑100 (MQ=255) aCCGTGAGGCTTTACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCAGAAGCGGTCTGAT < 1:1155184‑M2/100‑1 (MQ=255) aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:1837695‑M2/100‑1 (MQ=255) aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT > 2:2652852‑M2/1‑100 (MQ=255) aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 2:286140‑M2/100‑1 (MQ=255) ggCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATATAGATTAAATCAGACCGCTTCTGCGGTCTGATttaatct > 1:1797505‑M2/1‑93 (MQ=255) ttACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggc > 1:333420‑M2/1‑84 (MQ=255) gCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatctgtatcaggctgaaaat > 1:314213‑M2/1‑77 (MQ=255) gagaAGATTTTCAGCCTGATACAGATTAAATCCGAACGCAGAAGCGGTCTGATttgatctgtatcaggctgaaaatcttctctcatccgcctaaacagct < 1:714780‑M2/100‑48 (MQ=255) gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaa < 1:2764751‑M2/100‑61 (MQ=255) tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggt < 1:933986‑M2/100‑64 (MQ=255) aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaag < 2:1142910‑M2/100‑68 (MQ=255) cgatctaaatcAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc > 2:2069129‑M2/6‑32 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagc < 1:2040329‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc < 2:2304266‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc < 2:2304132‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc < 2:1530694‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc < 2:2304637‑M2/100‑69 (MQ=255) gatctaaatCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc > 1:22953‑M2/5‑31 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagctgcggcgttgtaaggttaagcct < 1:1338521‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc < 2:2060860‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc < 2:2863207‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggatgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcc < 1:339472‑M2/100‑70 (MQ=255) gATTAAATCAGAGCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcct < 1:2703519‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctc < 2:605431‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct < 1:2866361‑M2/100‑71 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca < 2:459315‑M2/100‑72 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtgtcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctca < 1:1558797‑M2/100‑73 (MQ=255) tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacg < 2:2343743‑M2/100‑74 (MQ=255) tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac < 1:2346842‑M2/100‑74 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGCTctaatctgtatcaggctgaaaatcttatctcaatctgccaaaacaccttcggcgttgtaaggttaagcctca < 1:1005184‑M2/98‑73 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 2:431589‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 1:1005831‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 2:1002861‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 2:2261010‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:731178‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg < 1:2829525‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg < 2:2305843‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:314790‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:950155‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 1:1952032‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:49939‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:11618‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:1925393‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagccagatc < 2:22954‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcagatcg < 1:2069117‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaagctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgtagtaagggtaagcctcacg < 2:1267392‑M2/100‑75 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt < 1:640901‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt < 2:841970‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt < 2:432302‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 2:2005233‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 2:1418674‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 2:2225621‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 2:1961484‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 1:421271‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 1:2344631‑M2/99‑75 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac < 2:491641‑M2/98‑74 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcagactgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 1:1818469‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatatgaatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttcagcctcacgg < 1:1916807‑M2/100‑76 (MQ=255) aaTCAGAACGAAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt < 1:2876938‑M2/100‑76 (MQ=255) | AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCG > NC_000913/4040401‑4040580 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |