New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4040481NA (NA)67 (0.690) 13/166 NT 100% intergenic (+58/‑36) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon
?NC_000913 = 4040505 0 (0.000)intergenic (+82/‑12) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon

Only 100 of 103 total aligned reads displayed.

ACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC  >  NC_000913/4040406‑4040604
                                                                                                   |                                                                                                   
aCCGTGAGGCTTTACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCAGAAGCGGTCTGAT                                                                                                     <  1:1155184‑M2/100‑1 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                                                     <  1:1837695‑M2/100‑1 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                                                     >  2:2652852‑M2/1‑100 (MQ=255)
aCCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT                                                                                                     <  2:286140‑M2/100‑1 (MQ=255)
       ggCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATATAGATTAAATCAGACCGCTTCTGCGGTCTGATttaatct                                                                                              >  1:1797505‑M2/1‑93 (MQ=255)
                ttACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggc                                                                                     >  1:333420‑M2/1‑84 (MQ=255)
                       gCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatctgtatcaggctgaaaat                                                                              >  1:314213‑M2/1‑77 (MQ=255)
                                               gagaAGATTTTCAGCCTGATACAGATTAAATCCGAACGCAGAAGCGGTCTGATttgatctgtatcaggctgaaaatcttctctcatccgcctaaacagct                                                      <  1:714780‑M2/100‑48 (MQ=255)
                                                            gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaa                                         <  1:2764751‑M2/100‑61 (MQ=255)
                                                               tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggt                                      <  1:933986‑M2/100‑64 (MQ=255)
                                                                   aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaag                                  <  2:1142910‑M2/100‑68 (MQ=255)
                                                                    cgatctaaatcAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc                                 >  2:2069129‑M2/6‑32 (MQ=255)
                                                                    cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagc                                 <  1:2040329‑M2/100‑69 (MQ=255)
                                                                    cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc                                 <  2:2304637‑M2/100‑69 (MQ=255)
                                                                    cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc                                 <  2:2304266‑M2/100‑69 (MQ=255)
                                                                    cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc                                 <  2:2304132‑M2/100‑69 (MQ=255)
                                                                    cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc                                 <  2:1530694‑M2/100‑69 (MQ=255)
                                                                     gatctaaatCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc                                >  1:22953‑M2/5‑31 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagctgcggcgttgtaaggttaagcct                                <  1:1338521‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc                                <  2:2863207‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc                                <  2:2060860‑M2/100‑70 (MQ=255)
                                                                     aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggatgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcc                                <  1:339472‑M2/100‑70 (MQ=255)
                                                                      gATTAAATCAGAGCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcct                               <  1:2703519‑M2/100‑71 (MQ=255)
                                                                      gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctc                               <  2:605431‑M2/100‑71 (MQ=255)
                                                                      gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct                               <  1:2866361‑M2/100‑71 (MQ=255)
                                                                       aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca                              <  2:459315‑M2/100‑72 (MQ=255)
                                                                        ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtgtcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctca                             <  1:1558797‑M2/100‑73 (MQ=255)
                                                                         tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacg                            <  2:2343743‑M2/100‑74 (MQ=255)
                                                                         tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac                            <  1:2346842‑M2/100‑74 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGCTctaatctgtatcaggctgaaaatcttatctcaatctgccaaaacaccttcggcgttgtaaggttaagcctca                             <  1:1005184‑M2/98‑73 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg                           <  2:431589‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg                           <  1:1005831‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  2:2261010‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  2:1002861‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg                           <  1:731178‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg                           <  1:2829525‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg                           <  2:2305843‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  2:49939‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  2:314790‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  2:1925393‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  2:11618‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  1:1952032‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagccagatc                           <  2:22954‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcagatcg                           <  1:2069117‑M2/100‑75 (MQ=255)
                                                                          aaaTCAGAACGCAGAAGCGGTCTGATttaagctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgtagtaagggtaagcctcacg                           <  2:1267392‑M2/100‑75 (MQ=255)
                                                                           ccgatctacgcagaaGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          >  2:709294‑M2/8‑25 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  2:841970‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  2:432302‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  1:640901‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt                          <  2:2005233‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  2:2225621‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  2:1418674‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  1:421271‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg                           <  1:2344631‑M2/99‑75 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcac                            <  2:491641‑M2/98‑74 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcagactgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg                          <  1:1818469‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGCAGAAGCGGTCTGATttaatatgaatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttcagcctcacgg                          <  1:1916807‑M2/100‑76 (MQ=255)
                                                                           aaTCAGAACGAAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt                          <  1:2876938‑M2/100‑76 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt                         <  2:2830810‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagtataagactcacggt                         <  1:1992849‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggt                         <  1:1062577‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggt                         <  1:197101‑M2/100‑77 (MQ=255)
                                                                            aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggt                         <  2:156193‑M2/100‑77 (MQ=255)
                                                                             tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttc                        <  1:1920747‑M2/100‑78 (MQ=255)
                                                                              cAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttca                       <  1:1247247‑M2/100‑79 (MQ=255)
                                                                              cAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttc                       <  1:1489130‑M2/100‑79 (MQ=255)
                                                                              cAGAACGCAGAAGCGGTCTGAGttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttc                       <  1:352068‑M2/100‑79 (MQ=255)
                                                                                  aCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggtagatcgg                   <  1:709291‑M2/100‑83 (MQ=255)
                                                                                  aCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttcattag                   <  1:690604‑M2/100‑83 (MQ=255)
                                                                                              tCTGATttcatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  2:314819‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  2:1504356‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  2:2250568‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  1:2383702‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  1:1126347‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       <  1:165287‑M2/100‑95 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc       >  1:1405376‑M2/1‑6 (MQ=255)
                                                                                              tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgcttcattagtaccggttagc       <  1:1616786‑M2/100‑95 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgctaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      >  1:1868650‑M2/1‑5 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      <  2:1296036‑M2/100‑96 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      >  2:2806211‑M2/1‑5 (MQ=255)
                                                                                               cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      <  2:2789092‑M2/100‑96 (MQ=255)
                                                                                                tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc     >  1:982891‑M2/1‑4 (MQ=255)
                                                                                                tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc     >  2:1051296‑M2/1‑4 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatgcgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct      >  2:2588333‑M2/1‑3 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  1:946457‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  1:68097‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  1:2586396‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    <  1:144076‑M2/100‑98 (MQ=255)
                                                                                                 gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca    >  2:2290401‑M2/1‑3 (MQ=255)
                                                                                                  aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtagcggttagctcaa   <  1:1032341‑M2/100‑99 (MQ=255)
                                                                                                  aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa   <  1:1445382‑M2/100‑99 (MQ=255)
                                                                                                  aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa   <  1:2317106‑M2/100‑99 (MQ=255)
                                                                                                  aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa   >  2:802482‑M2/1‑2 (MQ=255)
                                                                                                  aTttaatcggtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa   >  1:20243‑M2/1‑2 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  2:404537‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  1:2646000‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  <  1:877137‑M2/100‑100 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  >  2:2732880‑M2/1‑1 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  >  1:2890584‑M2/1‑1 (MQ=255)
                                                                                                   tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac  >  1:2573694‑M2/1‑1 (MQ=255)
                                                                                                   |                                                                                                   
ACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC  >  NC_000913/4040406‑4040604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.