New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4317917 = | NA (NA) | 9 (0.080) | 5/164 | NT | NA | noncoding (1/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences |
? | NC_000913 | 4317949 = | NA (NA) | noncoding (33/83 nt) | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP323 (repetitive extragenic palindromic) element; contains 2 REP sequences |
CGGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4318022‑4317917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGG > NC_000913/4317949‑4318047 CGGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCA < 1:2257026/100‑1 GGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCAT > 2:1506485/1‑100 GGTTTTGCAGAATTGAGACGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCAT > 2:17538/1‑100 GTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATC > 2:857922/1‑100 TTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCGGCGTCGCATCCG < 2:1572658/100‑1 TTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGA < 1:927226/100‑1 TGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC > 2:2892712/1‑100 CAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC > 2:1295019/1‑98 cgTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACCTACGGGGA‑CGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAatgg > 1:950246/3‑94 CCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCA > 2:2499702/1‑100 CCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAAT > 1:1735189/1‑100 AGGTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTG < 1:2499720/100‑1 cTCGGCTAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAACGCGTTTACGCCGCATCCGCCACCGCCTCAATTCTGC > 2:3056796/2‑99 GTCGGCTAAGACACGTCAGCGTCGCATCCGACCTACGGGGAGCGCAGTTGAAGGCCGGATAAGGCGTTTACGCCGCATCCGCCACCGCCTCAATTCTac > 2:3056767/1‑97 GTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGCTAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA > 2:793463/1‑100 GTCGGATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCA > 1:1916464/1‑100 GATAAGACGCGTCAGCGTCGCATCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAAC > 2:3021062/1‑100 TCCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTA > 2:3053431/1‑100 CCGTCCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTA < 1:152115/99‑1 CCGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTAT > 2:1779072/1‑100 CGACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATA < 2:2980840/100‑1 GACCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATAC < 1:1706685/100‑1 CCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGCCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGG > 1:1045170/1‑100 CCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGG > 2:1109439/1‑100 CGGTTTTGCAGAATTGAGCCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAATGCGCTCCCCGTAGGTCGGATAAGACGCGTCAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4318022‑4317917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGGGGAGCGCATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACCGGCTCAATTCTGCAAAACCGATGACACCAGCAGCTGTGTATACGG > NC_000913/4317949‑4318047 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |