| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 173504 = | NA (NA) | 5 (0.050) | 3/164 | NT | NA | noncoding (1/85 nt) | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 173536 = | NA (NA) | noncoding (33/85 nt) | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TTGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/173607‑173504‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC > NC_000913/173536‑173634 TTGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCAT > 1:3069305/1‑99 TGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCG > 1:3040747/1‑100 GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG > 2:1528050/1‑100 GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG > 1:1788877/1‑100 GTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGG > 2:1245830/1‑100 GTGATCCAGCATGGTTTGTCGGATGAGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGACCCGATAAGACGGGCCAGCGTCGCATC > 2:1200887/1‑98 GATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC > 2:1369254/1‑100 GATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC > 1:573718/1‑100 GATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGG < 1:2318441/99‑1 GATCCAGCATGGTTTGTCGAATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC > 2:196359/1‑100 AGGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGA > 1:2623307/1‑100 GGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCTGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT > 2:2210461/1‑100 GGCCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAT > 1:771657/1‑100 CCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCA > 1:2014047/1‑100 CCCGATAAGACGCGCCAGCGTCGCATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCA > 1:2013890/1‑100 tagCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTG < 1:1893078/97‑1 ATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGC < 2:1608145/100‑1 TCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA < 1:2565573/100‑1 TCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA < 2:506552/100‑1 CGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACTAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAG < 2:1779045/100‑1 CGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAG > 2:2289120/1‑100 CGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAG > 1:1093041/1‑100 GGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCA > 1:1409677/1‑98 GGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCA > 1:630700/1‑100 GGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCA < 2:253990/100‑1 CCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC > 1:1956847/1‑100 CCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTCCACGCCGCATCCGACAAACAATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC < 2:1770816/100‑1 TTGTGATCCAGCATGGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGATTCGGGGCCGTTTGTAGGCCCGATAAGACGCGCCAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/173607‑173504‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATC > NC_000913/173536‑173634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |