BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	173504 =	NA (NA)	5 (0.050)	3/164	NT	NA	noncoding (1/85 nt)	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	173536 =	NA (NA)	5 (0.050)	3/164	NT	NA	noncoding (33/85 nt)	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 167 total aligned reads displayed.

GCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCG  >  NC_000913/173437‑173635

gCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGcc                                                                                                     >  1:3028411/1‑100 (MQ=255)

gCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAAAGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGcc                                                                                                     >  2:1114292/1‑100 (MQ=255)

atccagcatggtttgtcggatgcggcgtgaacgccttatccgacctacgattcggggccgtttgtagGCCCGATGCGACGCTGGCGCGTCTTATCGGGcc                                                                                                     >  1:771657‑M1/68‑100 (MQ=255)

atccagcatggtttgtcggatgcggcgtgaacgccttatccgacctacgattcagggccgtttgtagGCCCGATGCGACGCTGGCGCGTCTTATCGGGcc                                                                                                     >  2:2210461‑M1/68‑100 (MQ=255)

 ccGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCt                                                                                                    <  2:2605109/100‑1 (MQ=255)

 ccGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCt                                                                                                    <  1:844352/100‑1 (MQ=255)

  cGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTa                                                                                                   >  1:254601/1‑100 (MQ=255)

   gTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTAc                                                                                                  >  2:501860/1‑100 (MQ=255)

   gTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGACCAAc                                                                                                  >  1:529338/1‑100 (MQ=255)

    ttAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACa                                                                                                 >  2:40211/1‑100 (MQ=255)

       aTTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAAc                                                                                              <  1:1500040/100‑1 (MQ=255)

        tttttCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACg                                                                                             <  1:1647707/100‑1 (MQ=255)

          tttCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGc                                                                                           >  1:1097242/1‑100 (MQ=255)

           ttCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGcc                                                                                          <  2:182395/100‑1 (MQ=255)

             ccATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGccac                                                                                        <  1:2201018/100‑3 (MQ=255)

              cATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCg                                                                                       >  2:706826/1‑100 (MQ=255)

               atatAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGa                                                                                      <  1:3048210/100‑1 (MQ=255)

                 ataACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGaa                                                                                     >  2:2818933/1‑99 (MQ=255)

                 ataACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAAt                                                                                    >  1:2939292/1‑100 (MQ=255)

                  taACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATc                                                                                   >  2:95957/1‑100 (MQ=255)

                  taACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATc                                                                                   >  1:1232522/1‑100 (MQ=255)

                     cGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTa                                                                                <  1:2039041/100‑1 (MQ=255)

                     cGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTa                                                                                <  1:1547592/100‑1 (MQ=255)

                     cGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTa                                                                                <  1:75475/100‑1 (MQ=255)

                     cGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTa                                                                                <  1:395890/100‑1 (MQ=255)

                     cGGCCCTGTACGCCTGGACGGATAAAGCGTTTACCCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTa                                                                                <  2:1711475/100‑1 (MQ=255)

                       gCCCTGTACGCCTGGACGGAGAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAAGGGCCCCGAATCGTAgg                                                                              >  2:1893066/1‑100 (MQ=255)

                        cccTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGTGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGt                                                                             <  1:1190090/100‑1 (MQ=255)

                        cccTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGt                                                                             >  1:1183722/1‑100 (MQ=255)

                        cccTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGt                                                                             >  2:2295127/1‑100 (MQ=255)

                            gTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGa                                                                         <  1:1015965/100‑1 (MQ=255)

                             tACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGAt                                                                        <  1:1328916/100‑1 (MQ=255)

                               cGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGACTACAAACGGCCCCGAATCGTAGGTCGGATaa                                                                      >  2:2862892/1‑100 (MQ=255)

                               cGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACGGCCCCGAATCGTAGCTCGGATaa                                                                      >  1:3120444/1‑100 (MQ=255)

                                gCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAg                                                                     >  2:3045769/1‑100 (MQ=255)

                                 ccTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAgg                                                                    >  1:230265/1‑100 (MQ=255)

                                       cGGATAAAGCGTTTACGCGAAAACGGATGCCCGATGAGACGCTGGCGCGTCTTATCGGGGCTACAAACGGCCCCGAATCATAGGTCCGATAAGGCGt                                                                 >  2:771648/1‑97 (MQ=38)

                                         gATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcg                                                            >  2:85381/1‑100 (MQ=255)

                                            aaaGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccg                                                         <  1:2880721/100‑1 (MQ=255)

                                             aaGCGTTTACGCGGCAACGGATGCCCGATGCGACGCTGTCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccgc                                                        >  2:2004430/1‑100 (MQ=255)

                                             aaGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccgc                                                        >  2:299866/1‑100 (MQ=255)

                                             aaGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccgc                                                        <  1:98503/100‑1 (MQ=255)

                                             aaGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCAcgccg                                                         <  1:2153220/99‑1 (MQ=255)

                                              aGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCA                                                       >  2:2764256‑M1/1‑100 (MQ=255)

                                                 gTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATGCGGCGTGAACGCCTTATCC                                                    <  2:1443660‑M1/100‑1 (MQ=255)

                                                   ttACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGA                                                  >  1:1889494‑M1/1‑100 (MQ=255)

                                                    tACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                 >  2:2155901‑M1/1‑100 (MQ=255)

                                                    tACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                 >  1:2813381‑M1/1‑100 (MQ=255)

                                                    tACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGAC                                                 >  2:1955523‑M1/1‑100 (MQ=255)

                                                     aCGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAcc                                                <  1:1085474/100‑2 (MQ=25)

                                                      cgcgACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATGCGGCGTGAACGCCTTATCCGACc                                                <  1:2267649‑M1/99‑2 (MQ=255)

                                                      cgcgACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACaa                                               >  1:2965301/1‑100 (MQ=255)

                                                        cgACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAAc                                             >  1:2235628/1‑100 (MQ=255)

                                                         gACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATGCGGCGTGAACGCCTTATCCGAcctacg                                            <  1:1779781/100‑6 (MQ=25)

                                                         gACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAAcc                                            >  2:1086216/1‑100 (MQ=255)

                                                          aCAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCa                                           >  2:3083624/1‑100 (MQ=255)

                                                            aaCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCa                                           >  1:1770828/1‑98 (MQ=255)

                                                            aaCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg                                         <  1:1952908/100‑1 (MQ=255)

                                                            aaCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg                                         >  1:186291/1‑100 (MQ=255)

                                                            aaCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATg                                         <  1:2104074/100‑1 (MQ=255)

                                                             aCGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGc                                        >  1:1293181/1‑100 (MQ=255)

                                                                gATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTgg                                     <  2:2178382/100‑1 (MQ=255)

                                                                gATGCCCGATGAGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATACGGCGTTCACGCCGCATCCGACAAACCATGCTg                                      <  1:3085214/99‑1 (MQ=255)

                                                                 aggcccgataagacgcgccagcgtcgcatcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGa                                    >  1:2623307‑M2/35‑100 (MQ=255)

                                                                 aTGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGa                                    <  1:2643120/100‑1 (MQ=255)

                                                                  tGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGaa                                   >  2:2570649/1‑99 (MQ=255)

                                                                  ggcccgataagacgcgccagcgtcgcatcgggcCTACAAACGGCCCTGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGAt                                   >  2:2210461‑M2/34‑100 (MQ=255)

                                                                   GCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATTCGACAAACCATGCTGGATc                                  >  2:196359‑M1/1‑100 (MQ=255)

                                                                   GCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATc                                  >  2:1369254‑M1/1‑100 (MQ=255)

                                                                    cccgataagacgcgccagcgtcgcatcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATca                                 >  1:2013890‑M2/32‑100 (MQ=255)

                                                                    CCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATc                                  <  1:2318441‑M1/99‑1 (MQ=255)

                                                                     CCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATcac                                >  2:1528050‑M1/1‑100 (MQ=255)

                                                                     CCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATcac                                >  2:1245830‑M1/1‑100 (MQ=255)

                                                                      CGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATcaca                               >  1:3040747‑M1/1‑100 (MQ=255)

                                                                       GATGCGACGCTGGCCCGTCTTATCGGGTCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCTCATCCGACAAACCATGCTGGATcac                                >  2:1200887‑M1/1‑98 (MQ=255)

                                                                        ATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACaa                              >  1:3069305‑M1/1‑99 (MQ=255)

                                                                           cGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTc                          >  2:58509/1‑100 (MQ=255)

                                                                            gACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATTCGACAAACCATGCTGGATCACAACTTc                          <  2:492472/99‑1 (MQ=255)

                                                                            gACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCg                         >  1:2709848/1‑100 (MQ=255)

                                                                             aCGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGc                        <  1:2749951/100‑1 (MQ=255)

                                                                              cGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCa                       >  1:1913956/1‑100 (MQ=255)

                                                                              cGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCa                       <  1:1709516/100‑1 (MQ=255)

                                                                               gCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCAGAACTTCGCaa                      >  2:2135055/1‑100 (MQ=255)

                                                                               gCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCaa                      <  2:1449982/100‑1 (MQ=255)

                                                                                cTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCaaa                     <  1:2391277/100‑1 (MQ=255)

                                                                                cTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCaaa                     >  1:687437/1‑100 (MQ=255)

                                                                                  ggCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAaca                   >  1:2597257/1‑100 (MQ=255)

                                                                                    cgcgTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACAcc                 <  1:501862/100‑1 (MQ=255)

                                                                                       gTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGa              <  2:230263/100‑1 (MQ=255)

                                                                                           tATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGt           >  1:601041/1‑99 (MQ=255)

                                                                                           tATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTg          >  1:2774716/1‑100 (MQ=255)

                                                                                            atcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgc         <  2:1608145‑M2/93‑1 (MQ=255)

                                                                                             tcgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgca        <  1:2565573‑M2/94‑1 (MQ=255)

                                                                                              cgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACTAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcag       <  2:1779045‑M2/95‑1 (MQ=255)

                                                                                              cgggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcag       >  2:2289120‑M2/6‑100 (MQ=255)

                                                                                               gggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgca        >  1:1409677‑M2/5‑98 (MQ=255)

                                                                                                ggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcagca     >  1:630700‑M2/4‑100 (MQ=255)

                                                                                                ggcCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTgcagca     <  2:253990‑M2/97‑1 (MQ=255)

                                                                                                  cCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATc   >  1:1956847‑M2/2‑100 (MQ=255)

                                                                                                  cCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTCCACGCCGCATCCGACAAACAATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATc   <  2:1770816‑M2/99‑1 (MQ=255)

GCCGTTAATTTTTCCATATAACGGCCCTGTACGCCTGGACGGATAAAGCGTTTACGCGACAACGGATGCCCGATGCGACGCTGGCGCGTCTTATCGGGCCTACAAACGGCCCCGAATCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCG  >  NC_000913/173437‑173635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.