| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4628749 | 104 (0.870) | 6 (0.050) | 4/164 | NT | 5.2% | noncoding (55/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4628768 | 125 (1.130) | noncoding (74/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628644‑4628749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < NC_000913/4628768‑4628671 gAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATG > 2:2382022/2‑100AAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATG < 1:2888371/100‑1 AAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCC > 1:1994466/1‑100 AACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTG < 2:654724/100‑1 AACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTG < 1:1049933/100‑1 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT > 2:2563947/1‑100 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT > 2:18781/1‑100 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT < 2:1876981/100‑1 CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT > 1:2857105/1‑100 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAATCGTCGCATCAGGC < 1:2182506/100‑1 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 1:2981642/100‑1 TGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGC < 1:723499/100‑1 GGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATT < 2:1553008/100‑1 TGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAG < 1:778384/100‑1 GTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGC < 1:151207/100‑1 GCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGAATCCTCA > 1:187467/1‑100 GCCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATACGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCA > 1:1934972/1‑100 CCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGGATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAA < 2:2074919/100‑1 CCTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAA > 2:1621382/1‑100 CTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAAT < 1:2248108/100‑1 CTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAAT > 1:1698703/1‑100 CTGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAAT > 1:1698628/1‑100 TGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCCATT > 1:2382038/1‑100 TGATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATT > 1:1867923/1‑100 GATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTATAACAGCCTTAGCATCCTCAATTT > 1:412057/1‑100 ATAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < 1:3122159/100‑1 AAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4628644‑4628749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGGTAAGCGTCGCATCAGGCATTGAGCACCGAATGCCGGATGCGGCGTGAACACCGTTTCCGGTCTACAACAGCCTTAGCATCCTCAATTTC < NC_000913/4628768‑4628671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |