New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2798052	NA (NA)	6 (0.050)	4/166	NT	NA	intergenic (+8/+39)	ygaP/stpA	DUF2892 family inner membrane rhodanese/DNA binding protein, nucleoid‑associated
	?	NC_000913	= 2798082	NA (NA)					noncoding (30/30 nt)	REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2797957‑2798052 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTC  <  NC_000913/2798082‑2797980                                                                                                                                                                                                         TGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGGTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCG                                                                                                     >  2:2019138/1‑100  GGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGG                                                                                                    <  1:903690/100‑1   ggGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA                                                                                                   >  1:2211892/3‑100   GTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGTTATGTTAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGA                                                                                                   >  2:1324211/1‑100    TGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGG                                                                                                    >  1:2130738/1‑98                             AGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGT                                                                         <  1:1570287/100‑1                              gggggTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTC                                                                        <  2:2720176/95‑1                                GGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGTTCCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGC                                                                      <  1:248396/100‑1                                 GTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCT                                                                     <  1:1504031/100‑1                                 GTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGC                                                                      <  1:248397/99‑1                                                CAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACGCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTG                                                       <  1:2528024/99‑1                                                                                                  CCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGAT    >  1:51030/1‑100                                                                                                    GGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTC  >  1:231311/1‑100                                                                                                    GGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTC  <  1:44597/100‑1                                                                                                                                                                                                         TGGTGCCGGGTTACTGTTTGCAGGAATCAGCGGTTTTTGTGGAATGGCAAGGTTGTTAGATAAGATGCCGTGGAACCAACGAGCTTGAGAAGCGACgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2797957‑2798052 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGTCGCTGCTAGGGCGCGTCCGGCGTCGCTTCTCAAGCTCGTTGGTTCCACGGCATCTTATCTAACAACCTTGCCATTCCACAAAAACCGCTGATTC  <  NC_000913/2798082‑2797980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.