New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3680367 =NA (NA)8 (0.070) 4/162 NT NA noncoding (1/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3680397 = NA (NA)noncoding (31/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 191 total aligned reads displayed.

CGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCG  >  NC_000913/3680269‑3680466
                                                                                                  |                                                                                                   
gccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGc                                                                                                    <  1:870443‑M1/2‑1 (MQ=255)
 ccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCt                                                                                                   >  1:560530‑M1/98‑100 (MQ=255)
  aaaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTg                                                                                                  <  2:2485667/100‑1 (MQ=255)
  aaaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTg                                                                                                  <  1:1927261/100‑1 (MQ=255)
   aaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTgg                                                                                                 <  2:2054812/100‑1 (MQ=255)
   aaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTgg                                                                                                 <  2:2521412/100‑1 (MQ=255)
     cGTGGGCACCTAACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATACCAGCGTAAACGCAGCATATGCAAAAGGCTGGa                                                                                                >  2:1117985/1‑99 (MQ=255)
        gggCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATaaa                                                                                            >  1:617413/1‑100 (MQ=255)
         ggCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAg                                                                                           <  1:2212598/100‑1 (MQ=255)
          gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAgt                                                                                          >  1:1853542/1‑100 (MQ=255)
          gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAg                                                                                           >  2:558851/1‑99 (MQ=255)
            aCCTGACCGCAGGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGAAAACGCAGCATATGCAAAAGGCTGGATAAAgtgt                                                                                        >  2:1707092/1‑100 (MQ=255)
             ccTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGtt                                                                                       >  2:3068241/1‑100 (MQ=255)
                 aCCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTAccc                                                                                   >  1:1716792/1‑100 (MQ=255)
                  ccGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTAcccc                                                                                  <  1:2965423/100‑1 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCGGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                <  2:972190/100‑1 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                <  2:2423641/100‑1 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                <  2:2021412/100‑1 (MQ=255)
                       aGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTAt                                                                             <  2:1228575/100‑1 (MQ=255)
                       aGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTAt                                                                             >  1:2412223/1‑100 (MQ=255)
                         tACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATcc                                                                           <  2:209195/100‑1 (MQ=255)
                         tACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATcc                                                                           <  1:769880/100‑1 (MQ=255)
                           acggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTGCCCCTCTATCCAg                                                                         >  2:2010453‑M1/72‑100 (MQ=255)
                           acggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAg                                                                         >  1:137789‑M1/72‑100 (MQ=255)
                           acagatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAg                                                                         >  2:3226857‑M1/72‑100 (MQ=255)
                            cggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        >  1:543140‑M1/71‑100 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        <  1:1063909/100‑1 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        <  2:1045867/100‑1 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        >  1:195336/1‑100 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        <  1:218608/100‑1 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATCCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        <  1:2288513/100‑1 (MQ=255)
                              gatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                       >  1:1446631‑M1/69‑99 (MQ=255)
                                aTTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCAt                                                                    >  1:3158962/1‑100 (MQ=255)
                                 ttCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATc                                                                   <  2:1912263/100‑1 (MQ=255)
                                 ttCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATc                                                                   <  2:402637/100‑1 (MQ=255)
                                 ttCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATc                                                                   <  1:1815415/100‑1 (MQ=255)
                                 attccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATc                                                                   >  2:2825549‑M1/66‑100 (MQ=255)
                                   cAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATcc                                                                  >  2:1875695/1‑99 (MQ=255)
                                   cAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCa                                                                 <  2:1853530/100‑1 (MQ=255)
                                        tCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAAt                                                            <  2:1430058/100‑1 (MQ=255)
                                        tCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAAt                                                            <  1:1691625/100‑1 (MQ=255)
                                         ngcggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATa                                                           >  2:2740739/2‑100 (MQ=255)
                                         cgcgGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATa                                                           >  2:308616/1‑100 (MQ=255)
                                            ggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCt                                                        >  1:9053/1‑100 (MQ=255)
                                            ggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCt                                                        <  1:1095112/100‑1 (MQ=255)
                                              cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGa                                                      <  2:433941/100‑1 (MQ=255)
                                                 gATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGGATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATgg                                                   >  2:1735946/1‑100 (MQ=255)
                                                 gATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATgg                                                   <  1:713905/100‑1 (MQ=255)
                                                 gATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATgg                                                   <  1:2901550/100‑1 (MQ=255)
                                                  aTTATCACGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGt                                                  <  1:2600270/100‑1 (MQ=255)
                                                   ttATACCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGt                                                  <  2:936675/99‑1 (MQ=255)
                                                    tATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtg                                                <  2:3011359/100‑1 (MQ=255)
                                                    tATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtg                                                <  2:2663026/100‑1 (MQ=255)
                                                      ttccgatctaGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgtg                                              <  1:3148740/91‑1 (MQ=255)
                                                      tCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgtg                                              >  1:367291/1‑100 (MQ=255)
                                                       cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgtac                                             >  1:124502/1‑98 (MQ=255)
                                                       cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGc                                             <  1:1208155/100‑1 (MQ=255)
                                                       cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGc                                             <  2:1066681/100‑1 (MQ=255)
                                                        ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGc                                             <  2:1305545/99‑1 (MQ=255)
                                                        ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCt                                            <  1:32686/100‑1 (MQ=255)
                                                         cgcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTa                                           <  2:876968/100‑1 (MQ=255)
                                                          gcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTaa                                          >  1:2525069/1‑100 (MQ=255)
                                                           cgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAAc                                         <  1:1333691/100‑1 (MQ=255)
                                                           cgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAAc                                         <  1:2117646/100‑1 (MQ=255)
                                                            gTGAGGCGATTCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCACCTCATCCATAAATACCTGATGGTTGTGCTAACt                                        <  2:2131089/100‑1 (MQ=255)
                                                            gTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAAc                                         <  1:920868/99‑1 (MQ=255)
                                                             tGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtc                                       >  2:1524222/1‑100 (MQ=255)
                                                             tGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtc                                       <  1:1694833/100‑1 (MQ=255)
                                                               aGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgtgagatcggaa                                     >  2:3148712/1‑91 (MQ=255)
                                                               aGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcat                                     >  1:236124/1‑100 (MQ=255)
                                                                ggCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcatc                                    >  1:2719713/1‑100 (MQ=255)
                                                                ggCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcatc                                    >  2:858851/1‑100 (MQ=255)
                                                                      gCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATc                              <  1:858855/100‑1 (MQ=255)
                                                                      gCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATc                              <  1:2974220/100‑1 (MQ=255)
                                                                      gCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATc                              <  1:958734/100‑1 (MQ=255)
                                                                       ccAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCa                             >  2:286408/1‑100 (MQ=255)
                                                                        cAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAg                            <  1:2815977/100‑1 (MQ=255)
                                                                          gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGc                          <  2:3083455/100‑1 (MQ=255)
                                                                          gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGc                          <  1:979724/100‑1 (MQ=255)
                                                                           cGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCa                         >  2:2484130/1‑100 (MQ=255)
                                                                           cGTAAACGCAGCATACGCACAAGGCTGGATAAAGTGTTACCCCTCTATCCGGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCa                         <  1:2270533/100‑1 (MQ=255)
                                                                            gTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCAt                        <  2:2719690/100‑1 (MQ=255)
                                                                              aaaCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCACTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCAtt                       >  2:2585834/1‑99 (MQ=255)
                                                                               aaCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTAc                     <  2:339860/100‑1 (MQ=255)
                                                                               aaCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTAc                     <  1:3068268/100‑1 (MQ=255)
                                                                                aCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACt                    >  2:2268505/1‑100 (MQ=255)
                                                                                aCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACt                    >  1:379230/1‑100 (MQ=255)
                                                                                 cGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACtg                   >  1:483631/1‑100 (MQ=255)
                                                                                      caTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAg              <  1:1497855/100‑1 (MQ=255)
                                                                                      caTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAg              >  1:204715/1‑100 (MQ=255)
                                                                                        tatGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGt            >  1:1629786/1‑100 (MQ=255)
                                                                                         atGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTg           <  1:2073551/100‑1 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          >  1:837288/1‑100 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          <  2:1624366/100‑1 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          >  1:680421/1‑100 (MQ=255)
                                                                                           gCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGa         >  1:1295431/1‑100 (MQ=255)
                                                                                               aaGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAatat     <  2:1716780/100‑1 (MQ=255)
                                                                                                aGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATc    <  2:2367778/100‑1 (MQ=255)
                                                                                                  GCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCg  <  1:2742641‑M1/100‑1 (MQ=255)
                                                                                                  GCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCAAAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCg  >  2:2170866‑M1/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
CGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCG  >  NC_000913/3680269‑3680466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.