New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2835118NA (NA)8 (0.070) 6/164 NT NA noncoding (52/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2835148 NA (NA)noncoding (82/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 179 total aligned reads displayed.

GGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATC  >  NC_000913/2835049‑2835247
                                                                                                   |                                                                                                   
ggCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC                                                                                                     <  1:1165169‑M2/100‑1 (MQ=255)
 gCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                    <  1:2484386/100‑1 (MQ=255)
 gCTACTGTGCCTAAAATGTCGGATGCGACGCTAGCGCGTGTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATGCGGCa                                                                                                    >  2:2176883/1‑100 (MQ=255)
    aCTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                                                                 <  1:2105429/100‑1 (MQ=255)
     cTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                                                <  1:958394/100‑1 (MQ=255)
       gtgCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtg                                                                                              <  1:1346132/100‑1 (MQ=255)
       gtgCCTAAAATGTCAGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGgtg                                                                                              <  2:2206424/100‑1 (MQ=255)
          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                                                                           <  2:3039471/100‑1 (MQ=255)
          ccTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTcc                                                                                           >  2:3191572/1‑100 (MQ=255)
           cTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCa                                                                                          >  2:207893/1‑100 (MQ=255)
            tAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaa                                                                                         >  1:2529541/1‑100 (MQ=255)
            tAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGAGTTTACGCCGCATCCGGCAATGGTGTCCaa                                                                                         >  1:2714529/1‑100 (MQ=255)
             aaaaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCaaa                                                                                        >  2:2512867/1‑100 (MQ=255)
              aaaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAAt                                                                                       <  2:2417686/100‑1 (MQ=255)
               aaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATg                                                                                      >  1:1833542/1‑100 (MQ=255)
               aaTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATg                                                                                      <  1:2763442/100‑1 (MQ=255)
                 tGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCa                                                                                    <  1:2470980/100‑1 (MQ=255)
                 tGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCa                                                                                    <  1:1612623/100‑1 (MQ=255)
                 tGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCa                                                                                    <  1:1612676/100‑1 (MQ=255)
                  GTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCaa                                                                                   <  2:1320216‑M1/100‑1 (MQ=255)
                    cggataagacgcgccagcgtcttatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAaca                                                                                 >  2:2842603‑M2/31‑100 (MQ=255)
                     ggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAacac                                                                                >  1:13804‑M2/30‑100 (MQ=255)
                     ggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAacac                                                                                >  1:1329731‑M2/30‑100 (MQ=255)
                     ggataagacgcgccagcgtcgcatccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAaca                                                                                 >  2:2584987‑M2/30‑99 (MQ=255)
                      gataagacgcgccagcgtcgaatccgacCTACGGGGACGCATATCTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTTTCCAAATGCAACACg                                                                               >  1:1034536‑M2/29‑100 (MQ=255)
                          cGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGtttt                                                                           >  2:1849408/1‑100 (MQ=255)
                            aCGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTAt                                                                         <  2:748960/100‑1 (MQ=255)
                            aCGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTAt                                                                         <  1:592957/100‑1 (MQ=255)
                             cGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATc                                                                        <  1:2964204/100‑1 (MQ=255)
                             cGCTGGCGCGCCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGCCAATGGTGTCCAAATGCAACACGTTTTATc                                                                        <  2:2129157/100‑1 (MQ=255)
                              gCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATcc                                                                       <  2:1027814/100‑1 (MQ=255)
                                    gcgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTg                                                                 <  1:1513697/100‑1 (MQ=255)
                                     cgTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTgg                                                                <  2:3162752/100‑1 (MQ=255)
                                      gTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCAAAATGCAACACGTTTTATCCGTTCTGGa                                                               >  1:985217/1‑100 (MQ=255)
                                       tCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGAc                                                              >  1:2170099/1‑100 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           <  1:2947401/100‑1 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           >  1:3126219/1‑100 (MQ=255)
                                          tATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTc                                                           <  1:2411034/100‑1 (MQ=255)
                                           atccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCa                                                          >  1:736107‑M2/8‑100 (MQ=255)
                                            tccgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGCGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCAc                                                         <  1:1877062‑M2/94‑1 (MQ=255)
                                              cgacCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAAACCGTTTTCTCCGTTTTGGACTTc                                                           >  1:1402868‑M2/5‑96 (MQ=255)
                                                 cCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCt                                                    >  1:129972‑M2/2‑100 (MQ=255)
                                                 cCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCt                                                    <  1:3179545‑M2/99‑1 (MQ=255)
                                                  cTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTa                                                   >  1:1068299/1‑100 (MQ=255)
                                                  cTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTa                                                   <  2:453475/100‑1 (MQ=255)
                                                    aCGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAc                                                 <  1:1043158/100‑1 (MQ=255)
                                                    aCGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAc                                                 <  1:1849420/100‑1 (MQ=255)
                                                     cGGGGACGCATGTGTAGTCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGCCTTCACCCGCTAAcc                                                <  2:722680/100‑1 (MQ=255)
                                                      ggggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAAcc                                                <  1:488487/99‑1 (MQ=255)
                                                       nggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCaa                                              >  2:1530422/2‑100 (MQ=255)
                                                       gggACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCaa                                              >  2:3131649/1‑100 (MQ=255)
                                                         gACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcg                                            <  1:207895/100‑1 (MQ=255)
                                                          aCGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcgc                                           <  2:1401545/100‑1 (MQ=255)
                                                           cGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcgcg                                          >  1:2662079/1‑100 (MQ=255)
                                                           cGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAAcgcg                                          >  2:251244/1‑100 (MQ=255)
                                                             cATGTGTGGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        >  1:1699826/1‑100 (MQ=255)
                                                             cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACgcgc                                         >  2:793570/1‑99 (MQ=255)
                                                             cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        >  2:1928859/1‑100 (MQ=255)
                                                             cATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        >  2:1929413/1‑100 (MQ=255)
                                                              aTGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgcc                                        <  1:372978/99‑1 (MQ=255)
                                                              aTGTGTAGGCCGGATAAGGCGTCTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgccg                                       >  2:2855765/1‑100 (MQ=255)
                                                               tgtgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGcgccgc                                      >  1:2852747/1‑100 (MQ=255)
                                                                 tgtAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcaca                                     <  2:1273581‑M2/99‑65 (MQ=255)
                                                                  gtAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagc                                   <  2:2154979/100‑1 (MQ=255)
                                                                  gtAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcag                                    <  2:428542/99‑1 (MQ=255)
                                                                   tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCgcagca                                  <  1:1470598/100‑1 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAAt                                >  1:331287/1‑100 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTCTTATCCGCTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAAt                                >  2:2806662/1‑100 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGGGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAAt                                >  1:2296537/1‑100 (MQ=255)
                                                                      gCCGGATAAGGCGTTTACGCCGCATCCGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggaaaagtag                                 <  1:1869388‑M2/98‑69 (MQ=255)
                                                                      gCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATa                               >  1:47525/1‑100 (MQ=255)
                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagccc                              <  1:645102‑M2/100‑72 (MQ=255)
                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagccc                              <  1:1397957‑M2/100‑72 (MQ=255)
                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATTTTTCATGTTTTTTTTTTTTTGGACTTAAACCGCTAACCAACTCGCAgcatcatt                                >  2:38401/1‑96 (MQ=12)
                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATaa                              >  1:287593/1‑100 (MQ=255)
                                                                         ggATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAAcc                            <  1:2512885/100‑1 (MQ=255)
                                                                             aaGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCt                        >  2:3054298/1‑100 (MQ=255)
                                                                              aGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTg                       >  1:945792/1‑100 (MQ=255)
                                                                              aGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTg                       >  2:2029999/1‑100 (MQ=255)
                                                                               ggCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGc                      >  2:2663398/1‑100 (MQ=255)
                                                                               ggCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGc                      >  1:2184849/1‑100 (MQ=255)
                                                                                  gTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGcccc                   <  1:3191600/100‑1 (MQ=255)
                                                                                   tttACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCa                  <  2:140163/100‑1 (MQ=255)
                                                                                     tACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCaga                >  2:1725371/1‑100 (MQ=255)
                                                                                      aCGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCagag               <  2:1151033/100‑1 (MQ=255)
                                                                                        gccgcATCCGGCAATGGTGTCCAAATTCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc             <  2:416923/100‑1 (MQ=255)
                                                                                        gccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGAc             <  2:818379/100‑1 (MQ=255)
                                                                                         ccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACa            >  2:897281/1‑100 (MQ=255)
                                                                                         ccgcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACa            <  1:237195/100‑1 (MQ=255)
                                                                                           gcATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACaaa          <  2:1249302/100‑1 (MQ=255)
                                                                                             aTCCGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagcccacctacatcggcaatgttttca        >  1:2788072‑M2/1‑7 (MQ=255)
                                                                                             aTCCGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagcccacctacatcggcaatgttttca        >  2:2365743‑M2/1‑7 (MQ=255)
                                                                                               ccGGCctacacatgcgtccccgtaggttggataagacgcgccagcgtcgcatccgacattttaggcacagtagcccacctacatcggcaatgttttcaac      >  1:1249310‑M2/1‑5 (MQ=255)
                                                                                               ccGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagcccacctacatcggcaatgttttcaac      <  2:320057‑M2/100‑96 (MQ=255)
                                                                                               ccGGCctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagcccacctacatcggcaatgttttcaac      <  1:1263672‑M2/100‑96 (MQ=255)
                                                                                               ccGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGc      <  1:449763/100‑1 (MQ=255)
                                                                                               ccGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGc      <  2:1068294/100‑1 (MQ=255)
                                                                                                cGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGcc     <  2:369353/100‑1 (MQ=255)
                                                                                                 ggCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCa    >  1:2932415/1‑100 (MQ=255)
                                                                                                   cAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATc  <  2:342185/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCTACTGTGCCTAAAATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGGGGACGCATGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGTCCAAATGCAACACGTTTTATCCGTTCTGGACTTCACCCGCTAACCAACGCGCCGCAGCAATAACCCCCTGCCCCAGAGACAAACCGCCATC  >  NC_000913/2835049‑2835247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.