New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3555795 =NA (NA)5 (0.060) 4/162 NT NA intergenic (+5/+38) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
?NC_000913 3555821 = NA (NA)intergenic (+31/+12) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase

AGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3555900‑3555795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG  >  NC_000913/3555821‑3555918
                                                                                                                                                                                                            
AGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTAT                                                                                                          >  1:1742012/1‑100
AGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTAT                                                                                                          >  2:625208/1‑100
 GCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATC                                                                                                         <  2:1741998/100‑1
  CGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCC                                                                                                        <  1:2069911/100‑1
   GTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCG                                                                                                       >  1:206674/1‑100
   GTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCG                                                                                                       >  2:1102387/1‑100
      TCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGC                                                                                                     <  2:1964280/99‑1
                                                                          GATGTAAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCG                                >  1:153311/1‑100
                                                                          GATGTAAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCG                                >  1:2020037/1‑100
                                                                            TGTAAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCCCCGcc                              >  1:70423/1‑98
                                                                             GTAAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCA                             >  1:144252/1‑100
                                                                               AAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAG                           >  1:1455129/1‑100
                                                                                                  ATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGA        >  2:1196512/1‑100
                                                                                                     CGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATAT     <  2:542549/100‑1
                                                                                                        CTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAACGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG  <  2:1280353/100‑1
                                                                                                                                                                                                            
AGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3555900‑3555795
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG  >  NC_000913/3555821‑3555918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.