New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3555795 =NA (NA)5 (0.060) 4/162 NT NA intergenic (+5/+38) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
?NC_000913 3555821 = NA (NA)intergenic (+31/+12) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase

GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG  >  NC_000913/3555722‑3555918
                                                                                                   |                                                                                                 
gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                   <  2:1065253/100‑1 (MQ=255)
gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                   <  2:1574517/100‑1 (MQ=255)
cttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                   >  1:1455129‑M1/74‑100 (MQ=255)
 tGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTa                                                                                                  <  2:1136306/100‑1 (MQ=255)
  tgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                 >  1:144252‑M1/72‑100 (MQ=255)
  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                 <  1:1136799/100‑1 (MQ=255)
   ggcggggcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                                                >  1:70423‑M1/71‑100 (MQ=255)
   gCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                                                <  1:339120/100‑1 (MQ=255)
   gCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                                                <  1:1965381/100‑1 (MQ=255)
    cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                                                <  2:1954428/99‑1 (MQ=255)
    cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAt                                                                                               >  1:1691908/1‑100 (MQ=255)
    cccATCGAGAGGATGCGGTAGAACACGCCGAGCAATTGCTGGAGATGATGGGGTACGGCGTGTCAGTTTAGCTGGATAACGAGCGAGATCCGGGtt                                                                                                   >  2:1622617/1‑96 (MQ=255)
     cggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                                              >  1:2020037‑M1/69‑100 (MQ=255)
     cggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                                              >  1:153311‑M1/69‑100 (MQ=255)
       aTCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtctc                                                                                            <  2:1816467/100‑1 (MQ=255)
        tCGCCAGGATGCGGTACAACACGCCCAGCAATTGCGGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATctct                                                                                           <  2:2029706/100‑1 (MQ=255)
         cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                          <  1:1916677/100‑1 (MQ=255)
         cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                          >  1:940638/1‑100 (MQ=255)
           ccAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGca                                                                                        <  2:1700250/100‑1 (MQ=255)
            cAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCAGATAACGCGCCAGATCCGGCTTACATCTCTGcat                                                                                       <  2:2075165/100‑1 (MQ=255)
              ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatca                                                                                     <  1:1408195/100‑1 (MQ=255)
               gATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatcat                                                                                    <  2:1892503/100‑1 (MQ=255)
                 tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                                  <  2:2171716/100‑1 (MQ=255)
                 tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                                  >  2:1444159/1‑100 (MQ=255)
                      tACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGc                                                                             <  1:630783/100‑1 (MQ=255)
                       acaacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCt                                                                            <  1:542985/100‑1 (MQ=255)
                        caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTc                                                                           <  1:1737284/100‑1 (MQ=255)
                         aacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                                          >  1:1089936/1‑100 (MQ=255)
                         aacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                                          <  2:895848/100‑1 (MQ=255)
                               cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                                    >  1:2102506/1‑100 (MQ=255)
                                ccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGt                                                                   <  1:1312616/100‑1 (MQ=255)
                                  aGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGtt                                                                  >  2:2203418/1‑99 (MQ=255)
                                  aGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTa                                                                 >  1:478136/1‑100 (MQ=255)
                                     aaTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGc                                                              >  1:702402/1‑100 (MQ=255)
                                      aTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGcc                                                             <  2:267083/100‑1 (MQ=255)
                                        tGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATGCGGCTTACATCTCTGCGTCATTCAATGCTAACCCGCGTTACGCCa                                                            >  2:220715/1‑99 (MQ=255)
                                        tGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCAt                                                           <  1:656336/100‑1 (MQ=255)
                                        tGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCAt                                                           >  1:760352/1‑100 (MQ=255)
                                         gCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCTCGTTACGCCATc                                                          >  2:972944/1‑100 (MQ=255)
                                         gCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATc                                                          >  1:880088/1‑100 (MQ=255)
                                         gCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATc                                                          <  2:1439036/100‑1 (MQ=255)
                                          cTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCt                                                         >  2:1128819/1‑100 (MQ=255)
                                          cTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCt                                                         >  2:713659/1‑100 (MQ=255)
                                           tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACTCGCGTTACGCCATCTg                                                        <  2:297192/100‑1 (MQ=255)
                                             aaGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGtt                                                      >  2:1392607/1‑100 (MQ=255)
                                               gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                    <  1:242119/100‑1 (MQ=255)
                                                atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                                   <  1:1811213/100‑1 (MQ=255)
                                                 tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCCTCTGTTTCTa                                                  >  2:2333669/1‑100 (MQ=255)
                                                 tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                                  <  1:2067954/100‑1 (MQ=255)
                                                 tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                                  <  1:1229636/100‑1 (MQ=255)
                                                   atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                                <  1:424244/100‑1 (MQ=255)
                                                   atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                                <  1:1558010/100‑1 (MQ=255)
                                                   atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                                <  1:1444167/100‑1 (MQ=255)
                                                   atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                                                <  1:1223034/100‑1 (MQ=255)
                                                     ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                                              <  1:1725561/100‑1 (MQ=255)
                                                      gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATACTCACCCGCGTTACGCCATCTGTTTCTATCaaa                                             >  2:582345/1‑100 (MQ=255)
                                                      gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAACGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                                             >  2:1246808/1‑100 (MQ=255)
                                                       ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                            <  1:1128824/100‑1 (MQ=255)
                                                       ggTACGGCGTGTAAGTTTAGCCGAATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                            <  2:436649/100‑1 (MQ=255)
                                                             gCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAcc                                      <  1:818186/100‑1 (MQ=255)
                                                               gtgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGc                                    >  2:366899/1‑100 (MQ=255)
                                                                 gtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAACCTAAACAGCAc                                  >  2:97755/1‑100 (MQ=255)
                                                                  tAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc                                 >  1:171479/1‑100 (MQ=255)
                                                                   gatgtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCg                                >  1:2020037‑M2/33‑100 (MQ=255)
                                                                   gatgtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCg                                >  1:153311‑M2/33‑100 (MQ=255)
                                                                    aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCgg                               >  1:1448872/1‑100 (MQ=255)
                                                                     tgtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCCccgcc                              >  1:70423‑M2/31‑98 (MQ=255)
                                                                     gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc                              >  2:2274230/1‑100 (MQ=255)
                                                                     gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTGTCTATCAAACTAAACCCCAcc                                 >  2:2035078/1‑97 (MQ=255)
                                                                      gtaagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa                             >  1:144252‑M2/30‑100 (MQ=255)
                                                                        tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg                           >  2:206673/1‑100 (MQ=255)
                                                                        aagccggatctggcgcgttatccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg                           >  1:1455129‑M2/28‑100 (MQ=255)
                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGa                          <  2:1964280‑M1/99‑1 (MQ=255)
                                                                            CGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAAc                       >  2:1102387‑M1/1‑100 (MQ=255)
                                                                            CGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAAc                       >  1:206674‑M1/1‑100 (MQ=255)
                                                                             GGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACg                      <  1:2069911‑M1/100‑1 (MQ=255)
                                                                              GATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGc                     <  2:1741998‑M1/100‑1 (MQ=255)
                                                                               ATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCt                    >  1:1742012‑M1/1‑100 (MQ=255)
                                                                               ATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCt                    >  2:625208‑M1/1‑100 (MQ=255)
                                                                                tAACGCGCGAGATCCGGCTTACATCTCTGCATCATTCGATGCGCACCCGGGTTACGCCATCTGATTCTATCAAACTAAACCTCACCGGCCAGACACGc                     >  2:1809094/1‑98 (MQ=255)
                                                                                 aaCGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcc                  <  2:430140/100‑1 (MQ=255)
                                                                                  aCGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcca                 <  2:1350895/100‑1 (MQ=255)
                                                                                   cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTCTAAAACTAAACCGCACCCGCAAGAAACGCTccac                >  2:263039/1‑100 (MQ=255)
                                                                                   cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGACAAGAAACGCTccac                >  2:392859/1‑100 (MQ=255)
                                                                                     cgcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccacca              <  1:1470698/100‑1 (MQ=255)
                                                                                     cgcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccacca              >  1:816426/1‑100 (MQ=255)
                                                                                     cgcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccacc               <  2:1628368/99‑1 (MQ=255)
                                                                                       ccAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCaccacc            >  2:691434/1‑100 (MQ=255)
                                                                                        cAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcg           <  1:549739/100‑1 (MQ=255)
                                                                                         aGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgc          <  1:120157/100‑1 (MQ=255)
                                                                                         aGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgc          <  1:670030/100‑1 (MQ=255)
                                                                                          gATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcgcg         <  1:899900/100‑1 (MQ=255)
                                                                                          gATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACcg           >  2:2124400/1‑98 (MQ=255)
                                                                                           atccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGa        >  2:1196512‑M2/9‑100 (MQ=255)
                                                                                            tCCGGCTTACATCTCTGAATCATTCAATGCTAACCCGCGTTACGCCATCTCTTTCTATACAACTCAACCGCACCGGCAAGAAACGCTAcaccacaccga        >  2:579890/1‑94 (MQ=255)
                                                                                              cggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGatat     <  2:542549‑M2/95‑1 (MQ=255)
                                                                                              cGGCTTACATCTCTGCATCATTCACTGCTCACCCGCGTTACGCCATCTGTCCCTATCAAACTAAACCGCACCGACAAGAAACGCTCCACCACCGCGacct     >  2:826938/1‑97 (MQ=255)
                                                                                                 ctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAACGCACCGGCAAGAAACGCTCCACCACCGCGATATTgg  <  2:1280353‑M2/98‑1 (MQ=255)
                                                                                                   |                                                                                                 
GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG  >  NC_000913/3555722‑3555918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.