New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3898629 =	NA (NA)	9 (0.120)	6/162	NT	NA	intergenic (+20/+42)	cbrC/yieK	UPF0167 family protein/putative 6‑phosphogluconolactonase
	?	NC_000913	3898659 =	NA (NA)					intergenic (+50/+12)	cbrC/yieK	UPF0167 family protein/putative 6‑phosphogluconolactonase

CTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898733‑3898629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcctTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAC  >  NC_000913/3898659‑3898754                                                                                                                                                                                                           CTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTATGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCC                                                                                                       <  2:1276909/100‑1      TCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT                                                                                                  >  1:1188754/1‑100                                                                        AATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGA                                >  1:2122219/1‑100                                                                          TAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAG                              >  2:1011185/1‑100                                                                            AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGA                            >  1:1513387/1‑100                                                                             GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCCGCGGCTTTATCAGCGATTACCATCAGCGAAGG                             >  2:393785/1‑98                                                                             GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                           >  2:753160/1‑100                                                                             GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGG                             >  2:1750014/1‑98                                                                             GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTACGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                           >  1:810507/1‑100                                                                              GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                          >  1:292807/1‑100                                                                                  GATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGC                      >  1:2387238/1‑100                                                                                                gtagCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGCAGGATGCAGCTGCAACACGGAAGC        >  1:1337316/5‑100                                                                                                   CCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGG     >  1:1022497/1‑100                                                                                                    CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA    <  2:1192494/100‑1                                                                                                    CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA    <  1:122098/100‑1                                                                                                    CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA    >  2:671623/1‑100                                                                                                     GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA    <  2:195967/99‑1                                                                                                     GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCCGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA   >  1:346129/1‑100                                                                                                      GCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAC  <  2:1147349/100‑1                                                                                                                                                                                                           CTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898733‑3898629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcctTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAC  >  NC_000913/3898659‑3898754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.