New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 462198165 (0.760)5 (0.060) 5/166 NT 8.2% coding (213/1332 nt) yjjJ putative protein kinase
?NC_000913 = 4622003 52 (0.650)coding (235/1332 nt) yjjJ putative protein kinase
Rejected: Frequency below cutoff threshold.

TCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4621879‑4621981
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggaTGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCATATCGCGTTGCC  <  NC_000913/4622003‑4621906
                                                                                                                                                                                                         
TCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACC                                                                                                       <  1:1876261/100‑1
 CGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCG                                                                                                      <  2:1281590/100‑1
 CGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCG                                                                                                      >  2:1464440/1‑100
  GGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGG                                                                                                     >  1:339271/1‑100
  GGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGG                                                                                                     >  2:1869089/1‑100
                               ACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGATGTCGGCGAATTTATGCGCCTTTCCGGT                                                                        <  1:133693/100‑1
                                 GCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGATGTCGGCGAATTTATGCGCCTTTCCGGTAT                                                                      <  1:2178890/100‑1
                                   GATATGCACTGCGGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCG                                                                    <  2:1822413/100‑1
                                     TATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGGCTGGCGGGTGGACGATACCGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTC                                                                  <  2:2377266/100‑1
                                      ATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCC                                                                 <  1:1428213/100‑1
                                                                                                 ACCGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCATATCGCGT      <  1:1542588/100‑1
                                                                                                 ACCGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCATATCGCGT      >  1:95699/1‑100
                                                                                                  CCGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCGTATCGCGTT     >  2:502180/1‑100
                                                                                                   CGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCATATCGCGTTG    <  2:1158343/100‑1
                                                                                                   CGGATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCAATAAGGACGCAGCAGTGCATATAGCGTTG    >  1:23075/1‑100
                                                                                                     GATGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCATATCGCGTTGCC  <  1:348407/100‑1
                                                                                                                                                                                                         
TCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATACCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4621879‑4621981
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggaTGTCGGCGAATTTATGCGCCTTTCCGGTATCGTCCACCCGCCAGACGGGAATACGCTCAATTCCGCGATAAGGACGCAGCAGTGCATATCGCGTTGCC  <  NC_000913/4622003‑4621906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.