New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4637531	81 (0.940)	10 (0.130)	7/162	NT	12.5%	coding (836/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
	?	NC_000913	= 4637546	66 (0.850)					coding (851/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

AAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4637427‑4637531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggaCCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCCT  <  NC_000913/4637546‑4637448                                                                                                                                                                                                              AAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCG                                                                                                          <  2:1026555/100‑1  AGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGG                                                                                                         <  1:372851/100‑1    TATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCG                                                                                                       <  1:893207/100‑1      TGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA                                                                                                     >  2:1391057/1‑100                 CTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAA                                                                                          >  1:678491/1‑100                  TGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAA                                                                                         >  2:2342911/1‑100                           AAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCC                                                                                <  1:2342932/100‑1                             AACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGC                                                                              <  1:1451974/100‑1                              ACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCT                                                                             <  1:2002657/100‑1                              ACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCT                                                                             <  2:396595/100‑1                               CTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTC                                                                            <  1:1412936/100‑1                               CTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTC                                                                            <  1:2202634/100‑1                               CTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTC                                                                            <  2:988323/100‑1                                   ATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACG                                                                        <  1:1126993/100‑1                                                                                                   CGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTT        >  1:1314893/1‑100                                                                                                    GGCGGACCTTCCCGTAAAATTTCCGCCGATCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTT       <  2:1924333/100‑1                                                                                                      CGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATCTAGTTTTTC     <  1:848050/100‑1                                                                                                      CGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTC     >  2:443616/1‑100                                                                                                      CGGACCTTCGCGTAAAATTTCCGCCGCTCAACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTC     <  2:1943621/100‑1                                                                                                        GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC   >  1:536773/1‑100                                                                                                        GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAACTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC   <  2:250677/100‑1                                                                                                         ACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCCT  >  1:2249623/1‑100                                                                                                                                                                                                              AAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4637427‑4637531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggaCCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCCT  <  NC_000913/4637546‑4637448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.