| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1534883 = | NA (NA) | 9 (0.120) | 7/162 | NT | NA | noncoding (1/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1534913 = | NA (NA) | noncoding (31/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
ATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1534983‑1534883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGCC > NC_000913/1534913‑1535012 ATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGG < 1:2082542/100‑1ATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGG < 1:740188/100‑1 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCA < 2:1975848/100‑1 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCA > 2:2361217/1‑100 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCA > 1:225746/1‑100 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCA < 1:258534/100‑1 CTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAG > 1:2162318/1‑100 CTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTC > 1:723390/1‑100 TATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGC > 1:339563/1‑100 ATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCC > 1:1423025/1‑100 ATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCC > 2:1107494/1‑100 CCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTCGACCTGACAGGCGAAGCGCATCAGACACCGGATTCCGAGCTCAATTGCCCAT > 1:438891/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 1:404624/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 2:193939/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAACGCATCAGACAACGGTTTCAGAGTTCAATTGCCAATTC > 2:1856832/1‑100 ccgatctCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATC < 2:1238301/93‑1 ATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCG > 1:944907/1‑100 TCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGC < 2:554774/100‑1 CCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCT > 2:1645709/1‑100 CGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCAgatcgg > 1:1238308/1‑94 CGGCAGACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCG < 2:1513333/97‑1 GCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTG < 2:704962/100‑1 ATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGTAACAAAATCACCGCTGTGCC < 2:927573/100‑1 ATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGCC < 1:1930067/100‑1 ATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1534983‑1534883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGCC > NC_000913/1534913‑1535012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |