New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1534883 =NA (NA)9 (0.120) 7/162 NT NA noncoding (1/75 nt) REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1534913 = NA (NA)noncoding (31/75 nt) REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 112 total aligned reads displayed.

GATGATGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCC  >  NC_000913/1534786‑1534981
                                                                                                 |                                                                                                  
gatgatGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGcc                                                                                                  >  1:1496698/1‑100 (MQ=255)
gatgatGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGcc                                                                                                  >  1:1080651/1‑100 (MQ=255)
 ccgatctgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCg                                                                                                 >  1:1238308‑M1/97‑100 (MQ=255)
  tgatgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCgg                                                                                                <  2:784299/100‑1 (MQ=255)
  agcggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCgg                                                                                                >  2:1645709‑M1/96‑100 (MQ=255)
   gcggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGa                                                                                               <  2:554774‑M1/6‑1 (MQ=255)
    cggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtctGCCg                                                                                                 <  2:1513333‑M1/4‑1 (MQ=255)
    cggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGAt                                                                                              >  1:944907‑M1/94‑100 (MQ=255)
    atgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATGATTTATGTCAGGTTGCCGGAt                                                                                              <  2:489378/100‑1 (MQ=255)
     tgCGAAACATGGCTTTACCGGGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGa                                                                                               >  1:1186693/1‑98 (MQ=255)
     tccGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATg                                                                                             >  1:1613957/3‑100 (MQ=255)
      gCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgc                                                                                            <  1:792774/100‑1 (MQ=255)
       cGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCGGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcg                                                                                           >  1:703769/1‑100 (MQ=255)
       cGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcg                                                                                           >  2:1294015/1‑100 (MQ=255)
       cGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcg                                                                                           >  1:2059814/1‑100 (MQ=255)
        gattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatgccgagatcgg                                                                                          <  2:1238301‑M1/11‑8 (MQ=255)
          aaCATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcggcg                                                                                        <  1:20781/100‑1 (MQ=255)
           aCATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGt                                                                                       >  1:1199313/1‑100 (MQ=255)
            cATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATATGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTa                                                                                      >  2:2099265/1‑100 (MQ=255)
            cATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTa                                                                                      >  1:734953/1‑100 (MQ=255)
                gCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACg                                                                                  >  2:839836/1‑100 (MQ=255)
                  tttACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGcc                                                                                <  1:1753468/100‑1 (MQ=255)
                  tttACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGcc                                                                                <  2:583978/100‑1 (MQ=255)
                   ttACCGTGGATGAGTTAGCGCTGGTGATGGAGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCAGGATGCGGCGTAAACGACt                                                                               >  2:2194933/1‑100 (MQ=255)
                    tACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCtt                                                                              >  1:2303643/1‑100 (MQ=255)
                     aCCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTa                                                                             <  2:2059796/100‑1 (MQ=255)
                      ccGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTAt                                                                            >  1:2249238/1‑100 (MQ=255)
                      ccGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTAt                                                                            >  2:1950019/1‑100 (MQ=255)
                        gaattggcaattgaactctgaaaccgttgtctgatgcgtttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATcc                                                                          >  2:1856832‑M1/74‑100 (MQ=255)
                        gaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATcc                                                                          >  2:193939‑M1/74‑100 (MQ=255)
                        gaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATcc                                                                          >  1:404624‑M1/74‑100 (MQ=255)
                         tGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                         <  2:1802936/100‑1 (MQ=255)
                         tGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                         <  1:638517/100‑1 (MQ=255)
                         tGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                         >  1:2008370/1‑100 (MQ=255)
                          ggATGGGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCTGCGTAAACGCCTTATCCgg                                                                        <  2:1988920/100‑1 (MQ=255)
                          ggATGAGTTAGCGCTGGTGATGGCGGCGTTTGATGCGCACCCGGAGGCGGGAAAATAATCTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCgg                                                                        <  2:2031166/100‑1 (MQ=255)
                          atgggcaattgagctcggaatccggtgtctgatgcgcttcgcctgtcaggtcgacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCgg                                                                        >  1:438891‑M1/72‑100 (MQ=255)
                           gATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                       <  1:1648455/100‑1 (MQ=255)
                            aTGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCa                                                                      <  1:1761218/100‑1 (MQ=255)
                            aTGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCa                                                                      <  2:1417601/100‑1 (MQ=255)
                             ggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCAt                                                                     >  1:1423025‑M1/69‑100 (MQ=255)
                             ggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCAt                                                                     >  2:1107494‑M1/69‑100 (MQ=255)
                              gcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCATa                                                                    >  1:339563‑M1/68‑100 (MQ=255)
                              gAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCaac                                                                    <  1:2037154/100‑3 (MQ=25)
                                gTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACa                                                                  >  1:1357423/1‑100 (MQ=255)
                                gTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACa                                                                  >  1:1531870/1‑100 (MQ=255)
                                 ttAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACAt                                                                 <  1:389160/100‑1 (MQ=255)
                                   aGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCaacctgac                                                               <  1:181020/100‑8 (MQ=21)
                                    gcgcTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAg                                                              <  1:768410/100‑1 (MQ=255)
                                    gcgcTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAg                                                              <  1:189752/100‑1 (MQ=255)
                                    gaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAg                                                              >  1:723390‑M1/62‑100 (MQ=255)
                                     cgcTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCagatcggaag                                                             >  2:1101322/1‑91 (MQ=21)
                                       cTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGccc                                                           >  2:2111062/1‑100 (MQ=255)
                                          gTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGt                                                        >  2:1805134/1‑100 (MQ=255)
                                           tGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGtt                                                       <  1:1535170/100‑1 (MQ=255)
                                              tGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTa                                                    >  2:815478/1‑100 (MQ=255)
                                              tGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTa                                                    <  2:987131/100‑1 (MQ=255)
                                              tGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTa                                                    <  2:1886168/100‑1 (MQ=255)
                                               ggcggcGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAg                                                   <  2:1180276/100‑1 (MQ=255)
                                                 cggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGAc                                                 >  1:275472/1‑100 (MQ=255)
                                                  ggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGAcc                                                <  1:1950035/100‑1 (MQ=255)
                                                  ggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGAcc                                                <  1:2100325/100‑1 (MQ=255)
                                                  ggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCCTATCCGGCATACATTAGCCCGGTTGTAGAcc                                                <  1:499584/100‑1 (MQ=255)
                                                   gcgTTTGATACGCACCCGGAGGCGGGCAAATAATTTCTGTCAGGTTGCCGCCTGCGGCGTAAACGCCTTATCCGGCATACATTACTCCGGTTGTAGAc                                                 >  2:1821339/1‑98 (MQ=37)
                                                    cgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTg                                              <  1:636264/100‑1 (MQ=255)
                                                       ttGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACa                                           >  2:1841537/1‑100 (MQ=255)
                                                         gATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAgg                                         >  2:2042992/1‑100 (MQ=255)
                                                         gATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAgg                                         >  2:842864/1‑100 (MQ=255)
                                                         gATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAgg                                         >  1:224040/1‑100 (MQ=255)
                                                          aTACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGc                                        >  1:444788/1‑100 (MQ=255)
                                                           tACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGcn                                       <  1:921103/100‑2 (MQ=255)
                                                             cGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGaa                                     >  2:1667745/1‑100 (MQ=255)
                                                             cGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGaa                                     >  2:1667960/1‑100 (MQ=255)
                                                             cGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGaa                                     >  2:119064/1‑100 (MQ=255)
                                                              ggaCCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAg                                    >  1:1614209/3‑100 (MQ=255)
                                                              gCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGaa                                     <  2:661327/99‑1 (MQ=255)
                                                              cttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAg                                    >  1:2162318‑M1/36‑100 (MQ=255)
                                                                 cccGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAgcgc                                 <  1:163311/100‑1 (MQ=255)
                                                                 cccGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAgcgc                                 >  2:2284534/1‑100 (MQ=255)
                                                                      aGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAg                            <  1:2256628/100‑1 (MQ=255)
                                                                       ggCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGa                           >  1:304646/1‑100 (MQ=255)
                                                                         cGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACa                         >  2:2280795/1‑100 (MQ=255)
                                                                                 ttatTTACGTCAGGTTGCCGGATGCGGCGTAAACGCTTTGTCTGGGATAACTTAGCCCGGTTGTAGCCCTGACAGGCGCAGCGCATCAGACAACGGTTTc                 <  2:344941/98‑1 (MQ=25)
                                                                                  aatTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCa                <  1:2294800/100‑1 (MQ=255)
                                                                                   atTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCag               <  2:2249218/100‑1 (MQ=255)
                                                                                   atTTATGTCAGGTTGCCGGATGCGGCGGAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCag               <  2:92720/100‑1 (MQ=255)
                                                                                    tttATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCaga              <  2:989840/100‑1 (MQ=255)
                                                                                    tttATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCaga              <  2:986989/100‑1 (MQ=255)
                                                                                      tATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGt            <  2:219488/100‑1 (MQ=255)
                                                                                        tGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTc          <  1:185102/100‑1 (MQ=255)
                                                                                        tGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTc          >  1:1691905/1‑100 (MQ=255)
                                                                                        tGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTc          <  1:1640251/100‑1 (MQ=255)
                                                                                         gTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCa         >  1:998869/1‑100 (MQ=255)
                                                                                         gTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCa         <  1:2284555/100‑1 (MQ=255)
                                                                                          tCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCaa        >  2:152854/1‑100 (MQ=255)
                                                                                             ggTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTg     <  2:1496689/100‑1 (MQ=255)
                                                                                              gTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGc    <  1:849378/100‑1 (MQ=255)
                                                                                                tGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGccc  >  2:2361217‑M1/2‑100 (MQ=255)
                                                                                                tGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGccc  <  1:258534‑M1/99‑1 (MQ=255)
                                                                                                tGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGccc  >  1:225746‑M1/2‑100 (MQ=255)
                                                                                                 |                                                                                                  
GATGATGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCC  >  NC_000913/1534786‑1534981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.