| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3234693 | NA (NA) | 8 (0.100) | 7/164 | NT | NA | noncoding (56/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3234723 | NA (NA) | noncoding (86/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGT > NC_000913/3234595‑3234792 | gttctgtttTATCGAAGTGCGATTCCAGAACTGGTCAGACATTGCCGGATGCGACGCTTGCCGCGGCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGg < 2:270742‑M1/96‑2 (MQ=255) ttttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgc > 1:1737031‑M1/1‑98 (MQ=255) ttttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgc > 2:1992647‑M1/1‑98 (MQ=255) ttttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggat < 1:1539697‑M1/100‑8 (MQ=255) ttttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggat < 1:1539680‑M1/100‑8 (MQ=255) tttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATa > 1:1142161/1‑100 (MQ=255) tATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAg > 2:1845095/1‑100 (MQ=255) tATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAg > 2:854204/1‑100 (MQ=255) gAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGt < 1:1157105/100‑1 (MQ=255) aaGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGCTAAGGCg > 2:2085924/1‑98 (MQ=255) aaGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGtt < 2:2120043/100‑1 (MQ=255) aGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGttt < 1:711193/100‑1 (MQ=255) aGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGttt < 1:2074752/100‑1 (MQ=255) gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTa < 1:2063141/100‑1 (MQ=255) gcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcg > 1:611735/1‑100 (MQ=255) cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATCAGGCGTTTAc > 2:1983444/1‑98 (MQ=255) cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc > 2:2081802/1‑100 (MQ=255) cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc > 2:1586470/1‑100 (MQ=255) gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgcc < 1:204810/100‑1 (MQ=255) gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgcc < 1:1577738/100‑1 (MQ=255) aTTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccg < 1:1370852/100‑1 (MQ=255) ttCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgcctt < 2:115620‑M1/100‑24 (MQ=255) ttCCAGAACTGGGCAGACATTGCCGGATGCGACACTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc < 1:226760/100‑1 (MQ=255) ccAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCTGGATAAGGCGTTTACGCCGCAT < 1:749046‑M2/100‑1 (MQ=255) cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatc < 1:1295016‑M1/100‑27 (MQ=255) aGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatcc < 1:1642518‑M1/100‑28 (MQ=255) aGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatcc < 2:1592425‑M1/100‑28 (MQ=255) atctgGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAAAGTGCTGAACGTAGTCCGGATAAGGCGTTTACGCCGCATCCcg > 2:243363‑M2/3‑98 (MQ=255) aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGG > 2:240797‑M2/1‑100 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatccggc < 1:1130335‑M1/100‑31 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC > 1:643388‑M2/1‑100 (MQ=255) aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC > 1:2114627‑M2/1‑100 (MQ=255) cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa < 1:1218779/100‑1 (MQ=255) cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATACGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatccggcc < 2:1194021‑M1/100‑32 (MQ=255) gggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatccggccta < 1:1310590‑M1/100‑34 (MQ=255) gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa > 2:132390/1‑100 (MQ=255) gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa < 1:1818178/100‑1 (MQ=255) cAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTaa > 2:248968/1‑100 (MQ=255) gACATTGCGGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt < 2:1751414/100‑1 (MQ=255) gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatccggcctacgttc < 1:455449‑M1/100‑39 (MQ=255) cATTGCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATCAGTCGGTCACGCCGCACCCGGCAGGTAACTcc > 2:51113/1‑100 (MQ=25) tGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa < 2:2338438/100‑1 (MQ=255) gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt < 1:2186736/100‑1 (MQ=255) gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt > 2:1953636/1‑100 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATc < 2:385055/100‑1 (MQ=255) ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATc < 2:385209/100‑1 (MQ=255) aagagACGCTTGCCGCGTCTTATCCGCACTGGAGTCACGTACGGAACGTAGGCCGGATAAGTCGTTTACGCGGCAGCCGGCAGGTAACTCCCAATCt < 2:980455/93‑1 (MQ=25) aTGCGACGCTTGCCGCGTCTTATCCGGTCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc < 1:1946421/100‑1 (MQ=255) aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc < 1:1717912/100‑1 (MQ=255) tGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc < 1:1091872/100‑1 (MQ=255) cGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga > 1:152621/1‑100 (MQ=255) cGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga > 2:1213060/1‑100 (MQ=255) cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacga > 1:480654/1‑100 (MQ=255) cctcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTATGCCGAATAAGGCGTTTACGCCGCATCCGCCAGGTAACTCCCAATCTTACCGACGACGTccc < 2:1008457/97‑1 (MQ=38) atctgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTccc < 1:1438855/96‑1 (MQ=255) cgcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCa < 2:1967173/100‑1 (MQ=255) gcgTCTTATCCGGCCTGGAGTAGCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAg > 2:346417/1‑100 (MQ=255) gcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCCTACCGACGACGTCCCAg > 2:796758/1‑100 (MQ=255) cgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGc < 2:2229368/100‑1 (MQ=255) ggcTTATCCGGGCGGGAGTAATGTGTTGAACATAGGCCTGATCAGTCGTTTACGCCGCATCCGGCAGGTTGCTCCCAATCTTACCGACGACGTCCCa < 2:1244709/95‑1 (MQ=25) gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAgat > 2:1438847/1‑98 (MQ=255) tCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCg < 2:152620/100‑1 (MQ=255) ccGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc > 1:19416/1‑100 (MQ=255) ccGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc < 1:880688/100‑1 (MQ=255) cGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCGGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCt > 2:93550/1‑100 (MQ=255) ggCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCtt < 2:19415/100‑1 (MQ=255) ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc < 2:147828/100‑1 (MQ=255) ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc < 2:2295953/100‑1 (MQ=255) ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc < 2:127671/100‑1 (MQ=255) cTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCa < 2:1654946/100‑1 (MQ=255) ggAGTAACGTGCTGAACGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTCCAGt > 2:421070/1‑100 (MQ=255) aaCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACcac > 2:1354890/1‑100 (MQ=255) tGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAAt > 2:786066/1‑100 (MQ=255) gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAAtt > 2:393183/1‑100 (MQ=255) gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtc < 1:455449‑M2/100‑63 (MQ=255) gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttat < 1:1018863/100‑1 (MQ=255) gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttat < 2:1162244/100‑1 (MQ=255) aCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatta < 2:84838/100‑1 (MQ=255) aCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatta < 2:2132367/100‑1 (MQ=255) cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTtattat < 1:248970/100‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTattatt < 1:1582643/100‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTattatt > 1:1358793/1‑100 (MQ=255) tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgccc < 1:1310590‑M2/100‑68 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccgtataagacgcggcaagcgtcgcatccggcaatgtctgcccag < 2:1194021‑M2/100‑70 (MQ=255) ggCAGGATAAGCCGTTAACGCCGCATCCGGCAGGTAAATCGAAATCTTACCGCCGAAGCCCAAGCCTGGGCGCGATCCGTACCACAGATttaagattag > 2:1736306/1‑92 (MQ=9) | TTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGT > NC_000913/3234595‑3234792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |