New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3234693NA (NA)8 (0.100) 7/164 NT NA noncoding (56/86 nt) REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3234723 NA (NA)noncoding (86/86 nt) REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences

ACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTT  >  NC_000913/3234624‑3234822
                                                                                                   |                                                                                                   
aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC                                                                                                     >  1:643388‑M2/1‑100 (MQ=255)
aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC                                                                                                     >  1:2114627‑M2/1‑100 (MQ=255)
 cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                    <  1:1218779/100‑1 (MQ=255)
     gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa                                                                                                >  2:132390/1‑100 (MQ=255)
     gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa                                                                                                <  1:1818178/100‑1 (MQ=255)
      cAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTaa                                                                                               >  2:248968/1‑100 (MQ=255)
        gACATTGCGGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt                                                                                             <  2:1751414/100‑1 (MQ=255)
          cATTGCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATCAGTCGGTCACGCCGCACCCGGCAGGTAACTcc                                                                                           >  2:51113/1‑100 (MQ=25)
             tGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCaa                                                                                        <  2:2338438/100‑1 (MQ=255)
              gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                                                       >  2:1953636/1‑100 (MQ=255)
              gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                                                       <  1:2186736/100‑1 (MQ=255)
               ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATc                                                                                      <  2:385055/100‑1 (MQ=255)
               ccGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATc                                                                                      <  2:385209/100‑1 (MQ=255)
                   aagagACGCTTGCCGCGTCTTATCCGCACTGGAGTCACGTACGGAACGTAGGCCGGATAAGTCGTTTACGCGGCAGCCGGCAGGTAACTCCCAATCt                                                                                     <  2:980455/93‑1 (MQ=25)
                   aTGCGACGCTTGCCGCGTCTTATCCGGTCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc                                                                                  <  1:1946421/100‑1 (MQ=255)
                   aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc                                                                                  <  1:1717912/100‑1 (MQ=255)
                    tGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc                                                                                 <  1:1091872/100‑1 (MQ=255)
                      cGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                                               >  2:1213060/1‑100 (MQ=255)
                      cGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                                               >  1:152621/1‑100 (MQ=255)
                         cGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacga                                                                            >  1:480654/1‑100 (MQ=255)
                               cctcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTATGCCGAATAAGGCGTTTACGCCGCATCCGCCAGGTAACTCCCAATCTTACCGACGACGTccc                                                                      <  2:1008457/97‑1 (MQ=38)
                               atctgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTccc                                                                      <  1:1438855/96‑1 (MQ=255)
                                cgcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCa                                                                     <  2:1967173/100‑1 (MQ=255)
                                 gcgTCTTATCCGGCCTGGAGTAGCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAg                                                                    >  2:346417/1‑100 (MQ=255)
                                 gcgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCCTACCGACGACGTCCCAg                                                                    >  2:796758/1‑100 (MQ=255)
                                  cgTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGc                                                                   <  2:2229368/100‑1 (MQ=255)
                                   ggcTTATCCGGGCGGGAGTAATGTGTTGAACATAGGCCTGATCAGTCGTTTACGCCGCATCCGGCAGGTTGCTCCCAATCTTACCGACGACGTCCCa                                                                     <  2:1244709/95‑1 (MQ=25)
                                   gTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAgat                                                                  >  2:1438847/1‑98 (MQ=255)
                                         tCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCg                                                            <  2:152620/100‑1 (MQ=255)
                                          ccGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc                                                           <  1:880688/100‑1 (MQ=255)
                                          ccGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGc                                                           >  1:19416/1‑100 (MQ=255)
                                           cGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCGGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCt                                                          >  2:93550/1‑100 (MQ=255)
                                            ggCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCtt                                                         <  2:19415/100‑1 (MQ=255)
                                              ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc                                                       <  2:127671/100‑1 (MQ=255)
                                              ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc                                                       <  2:2295953/100‑1 (MQ=255)
                                              ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc                                                       <  2:147828/100‑1 (MQ=255)
                                               cTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCa                                                      <  2:1654946/100‑1 (MQ=255)
                                                 ggAGTAACGTGCTGAACGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTCCAGt                                                    >  2:421070/1‑100 (MQ=255)
                                                      aaCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACcac                                               >  2:1354890/1‑100 (MQ=255)
                                                          tGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAAt                                           >  2:786066/1‑100 (MQ=255)
                                                           gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAAtt                                          >  2:393183/1‑100 (MQ=255)
                                                              gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtc                                       <  1:455449‑M2/100‑63 (MQ=255)
                                                              gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttat                                       <  2:1162244/100‑1 (MQ=255)
                                                              gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttat                                       <  1:1018863/100‑1 (MQ=255)
                                                                aCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatta                                     <  2:2132367/100‑1 (MQ=255)
                                                                aCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatta                                     <  2:84838/100‑1 (MQ=255)
                                                                 cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTtattat                                    <  1:248970/100‑1 (MQ=255)
                                                                  gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTattatt                                   >  1:1358793/1‑100 (MQ=255)
                                                                  gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTattatt                                   <  1:1582643/100‑1 (MQ=255)
                                                                   tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgccc                                  <  1:1310590‑M2/100‑68 (MQ=255)
                                                                     ggCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccgtataagacgcggcaagcgtcgcatccggcaatgtctgcccag                                <  2:1194021‑M2/100‑70 (MQ=255)
                                                                     ggCAGGATAAGCCGTTAACGCCGCATCCGGCAGGTAAATCGAAATCTTACCGCCGAAGCCCAAGCCTGGGCGCGATCCGTACCACAGATttaagattag                                 >  2:1736306/1‑92 (MQ=9)
                                                                      gCCGGATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagt                               <  1:1130335‑M2/100‑71 (MQ=255)
                                                                      gCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATtcgtc                               >  2:19650/1‑100 (MQ=255)
                                                                       ccGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACTACAAATTTATTATtcgtcg                              >  1:1026537/1‑100 (MQ=255)
                                                                        cGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCATCTTCACCGCTTTCAGTACCACAAATTTATTATtcgtc                               <  2:1994535/98‑1 (MQ=255)
                                                                        cGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGc                             <  1:1396258/100‑1 (MQ=255)
                                                                        cGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGc                             <  1:217554/100‑1 (MQ=255)
                                                                         ggATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttct                            <  2:1592425‑M2/100‑74 (MQ=255)
                                                                         ggATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttct                            <  1:1642518‑M2/100‑74 (MQ=255)
                                                                          gATAAGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttctg                           <  1:1295016‑M2/100‑75 (MQ=255)
                                                                            tAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATa                         >  2:1162318/1‑100 (MQ=255)
                                                                             gcggCGTAAACGCCTTATCCGGCAGGGAACTCCCAATCTTACCGACGCCGTCCCACCTTCACCGCTGTCAGTCCCACAAATTTACTATTCGCCACAATAg                        >  2:1968242/3‑100 (MQ=255)
                                                                             aaGGCGTTTACGCCGCATCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaa                        <  2:115620‑M2/100‑78 (MQ=255)
                                                                              aGGCGTGTACGCCGCATCCGGCAGGTAACGCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgt                       <  2:905379/100‑1 (MQ=255)
                                                                               ggCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtg                      <  1:2339561/100‑1 (MQ=255)
                                                                                gCGTTTACGCCGCATCCGGCAGGTATCTCCCAATCTTACCTACGACTTCCCAGTTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg                     <  2:1490414/100‑1 (MQ=255)
                                                                                gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg                     <  2:1321979/100‑1 (MQ=255)
                                                                                gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg                     >  2:84421/1‑100 (MQ=255)
                                                                                gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg                     >  2:1282133/1‑100 (MQ=255)
                                                                                  gTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtggtg                   <  2:611733/100‑1 (MQ=255)
                                                                                  gTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtggt                    >  2:265608/1‑99 (MQ=255)
                                                                                   tttACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGc                  >  2:1005802/1‑100 (MQ=255)
                                                                                     tACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAg                <  1:583552/100‑1 (MQ=255)
                                                                                       cgccgcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGtt              >  2:951796/1‑100 (MQ=255)
                                                                                       cgccgcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGtt              <  1:2317077/100‑1 (MQ=255)
                                                                                        gccgcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTg             <  2:573067/100‑1 (MQ=255)
                                                                                        gccgcATCCAGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTg             <  2:1029161/100‑1 (MQ=255)
                                                                                         ccgcATCCGGCAGGTAACTCCCAATCTTACCGACGCCGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGc            >  2:1436065/1‑100 (MQ=255)
                                                                                         ccgcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGc            <  1:396738/100‑1 (MQ=255)
                                                                                          cgcATCGGGCAGGTAACTCCCAATCTGAGCGACGACGTCCTAGCCTCACCGCTTTCAGTGCCACAGATTAATTATGCGTCGCAATAGTCGTGCACTTGca           <  2:305657/100‑2 (MQ=255)
                                                                                          cgcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGcc           <  2:1358785/100‑1 (MQ=255)
                                                                                           gcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCg          <  1:1953652/100‑1 (MQ=255)
                                                                                             aTCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataaaa        <  1:1539680‑M2/100‑94 (MQ=255)
                                                                                             aTCCGGCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataaaa        <  1:1539697‑M2/100‑94 (MQ=255)
                                                                                                 ggCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGCAAAtc    >  2:2192290/1‑100 (MQ=255)
                                                                                                  gCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataaaacaaaa   >  1:1737031‑M2/1‑2 (MQ=255)
                                                                                                  gCctacgttcagcacgttactccaggccggataagacgcggcaagcgtcgcatccggcaatgtctgcccagttctggaatcgcgcttccataaaacaaaa   >  2:1992647‑M2/1‑2 (MQ=255)
                                                                                                  gCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCTCTCCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtct   <  2:1673126/100‑1 (MQ=255)
                                                                                                  gCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtct   <  1:79966/100‑1 (MQ=255)
                                                                                                   cctacgttcagcacgttactccaggccggataagccgcggcaagcgtcgcatccggcaatgtctgaccagttctggaatcgcacttcgataaaacagaac  <  2:270742‑M2/100‑100 (MQ=255)
                                                                                                   cAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtctt  <  2:1143402/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTT  >  NC_000913/3234624‑3234822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.