| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3428910 = | 16 (0.190) | 8 (0.100) | 5/168 | NT | 34.6% | intergenic (‑148/‑326) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| ? | NC_000913 | = 4207974 | NA (NA) | intergenic (‑442/‑173) | purH/rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTT > NC_000913/3428811‑3429008 | atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 1:1181063‑M1/100‑100 (MQ=255) tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgcctctgaaagaggaaagcgtaatatacgccacctcgc > 2:1034838‑M1/99‑100 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg < 1:1163201‑M1/3‑1 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg < 1:1910258‑M1/3‑1 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg > 1:280961‑M1/98‑100 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 2:331897‑M1/98‑98 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:615741‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:545627‑M1/4‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:2083077‑M1/4‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:1419084‑M1/4‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 2:1312312‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:1747312‑M1/5‑1 (MQ=255) aatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 2:2381781‑M1/95‑99 (MQ=255) ttaaTTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCt < 1:514396/97‑1 (MQ=1) ccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCG‑CTTT‑AGCGCACTGTcgc > 1:866695‑M1/76‑100 (MQ=255) gttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgcg > 2:1641080‑M1/73‑100 (MQ=255) gttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgcg > 1:1638205‑M1/73‑100 (MQ=255) aacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgcg > 2:2098798‑M1/73‑100 (MQ=255) tcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGTCGCGGCTTTCAGCTCACTGTCGCGAg > 1:1448245‑M1/71‑100 (MQ=255) tcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAg > 1:1157986‑M1/71‑100 (MQ=255) cggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 1:139640‑M1/70‑100 (MQ=255) ttagAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCctct > 2:525376/4‑100 (MQ=1) gttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCagag > 1:1750222‑M1/40‑100 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGCATTTCAGGAtttttt > 1:2352138/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 2:1288262/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 2:1730071/100‑1 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 1:708137/1‑100 (MQ=11) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt > 1:977465/1‑100 (MQ=31) tAAAGAGGAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGGGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 2:1048367/100‑1 (MQ=12) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 2:1295806/100‑1 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:2130954/100‑1 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc > 2:210377/1‑100 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 1:1831110/1‑100 (MQ=33) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc < 2:1346078/100‑1 (MQ=33) agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTctct > 1:285716/1‑100 (MQ=35) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc < 1:1547515/100‑1 (MQ=38) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg > 1:227875/1‑100 (MQ=40) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:166395/100‑1 (MQ=40) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtt > 2:985961/1‑100 (MQ=255) gtggCGACGCGGCTTTGAGCCCAGGGGCTTGAGCTTGCGTATATTACGCTTTCCTCTTTCAGATTCAACCCGGTACTTCAGGATTTTTTTCTCGTCgtt < 1:1666345/96‑1 (MQ=2) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg < 2:1050800/100‑1 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 2:549843/1‑100 (MQ=255) ttGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgt < 1:1196364/100‑1 (MQ=255) GCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTTgttgtt < 1:368538‑M1/99‑1 (MQ=255) | ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTT > NC_000913/3428811‑3429008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |