| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4168165 = | 52 (0.610) | 12 (0.150) | 5/168 | NT | 17.5% | noncoding (1507/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4168187 = | 64 (0.790) | noncoding (1529/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
ACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCG > NC_000913/4168066‑4168264 | gcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatcca < 1:1625261‑M1/1‑1 (MQ=255)gcctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggaaatcca < 1:2278780‑M1/1‑1 (MQ=255) actcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccaa < 1:1644057‑M1/2‑1 (MQ=255) ctcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAAc < 1:1814849‑M1/3‑1 (MQ=255) cgcactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAAc < 2:1035876‑M1/3‑1 (MQ=255) cactcccaacgcgtaaacgccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAACCg < 1:870246‑M1/5‑1 (MQ=255) gccttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTg > 1:2097463‑M1/78‑100 (MQ=255) ttttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGa > 1:1504898‑M1/76‑100 (MQ=255) cttgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGa > 1:125694‑M1/76‑100 (MQ=255) ttgcttttcactttctatcagacaatctgtgtgagcactgcaaagaacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGAt > 1:36325‑M1/75‑100 (MQ=255) ttactgctcattttcatcagacaatctgtgtgagcactgcaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATc > 2:68080‑M1/74‑100 (MQ=255) tgcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATc > 1:138234‑M1/74‑100 (MQ=255) gcttttcactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATCa > 1:2279999‑M1/73‑100 (MQ=255) actgctcattttcatcagacaatctgtgtgagcactgcaaaggacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATc > 2:651261‑M1/72‑98 (MQ=255) ttttcactttctatcagacaatctgtgtgagcacttcaaagaacgcttctttaaggtaagtaggtgatccAACCGTAGGGAAACCTGCGGTTGGATCa > 2:1047400‑M1/71‑98 (MQ=255) ctcattttcatcagacaatctgtgtgagcactgcaaagtacgcggctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATCAcctcc > 2:453182‑M1/68‑100 (MQ=255) cactttctatcagacaatctgtgtgagcactacaaagtacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATCAcctcct > 1:1982763‑M1/67‑100 (MQ=255) tACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGTTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGt < 2:99993/100‑1 (MQ=11) tACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGt < 2:1212062/100‑1 (MQ=11) tACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGt > 2:1580333/1‑100 (MQ=11) tACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGt < 2:1601495/100‑1 (MQ=11) ccACTTGGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAg < 1:35686/100‑1 (MQ=17) cTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGc > 2:1156408/1‑100 (MQ=33) cTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGc > 1:309460/1‑100 (MQ=32) cTTTGTGATTCACGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGc > 1:1570504/1‑100 (MQ=17) ttGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTc < 1:274326/100‑1 (MQ=33) ttGTGATTCATGACTGGAGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTAACTTAAAGAAGCGTACTTTGTAATGCTc > 2:1493438/1‑100 (MQ=255) tgtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTca > 1:479549/1‑100 (MQ=33) tgtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTca < 2:989727/100‑1 (MQ=33) tgtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTca > 2:661511/1‑100 (MQ=33) tgtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTca < 1:1184640/100‑1 (MQ=33) tgtgATTCATGACTGGGGTGAAGTAGGAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTc < 1:1559803/99‑1 (MQ=12) gtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTcac > 1:1782253/1‑100 (MQ=33) gtgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTcac < 1:1143401/100‑1 (MQ=33) caaagaacgcttctttaaggtaaggaggtgatccAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTcac > 1:368774‑M1/35‑100 (MQ=255) tgATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTcaca < 1:1475467/100‑1 (MQ=33) gATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTcacac > 2:693751/1‑100 (MQ=33) tCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGa < 1:588141/100‑1 (MQ=33) cATGACTGGGGTGAAGTCGTAACAAGGTACCCGTAGGGGAACCTGCGGTTGGATCACCTACTTACCTTAAAGAAGCGTACTTTGTAGTGCTcacac > 2:1727579/1‑96 (MQ=255) cATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGAt > 2:458241/1‑100 (MQ=33) cATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACATTAAAGAAGCGTACTTTGTAGTGCTCACACAGAt > 2:869085/1‑100 (MQ=17) aCTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTc < 2:1985800/100‑1 (MQ=33) aCTGGGGTGAAGTCGTAACAAGGTAACCGTAGGACAAACTGCGGTTGGATCACCTACTTACCTTAAAGAAGCGTACTTTGTAGTGCTtacaca < 2:1419499/93‑1 (MQ=11) cTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCt > 1:944949/1‑100 (MQ=33) cTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCt < 1:119013/100‑1 (MQ=33) cTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCt > 2:225208/1‑100 (MQ=33) cTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCt < 2:784584/100‑1 (MQ=33) cTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCt < 1:1059803/100‑1 (MQ=33) ggggTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGa > 2:1162213/1‑100 (MQ=33) ggggTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGa > 2:1997789/1‑100 (MQ=32) ggTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATa > 2:1041765/1‑100 (MQ=35) gTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAg < 2:1875897/100‑1 (MQ=35) gAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGaa > 1:2304616/1‑100 (MQ=38) aGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAg > 1:1182501/1‑100 (MQ=38) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGt > 2:533730/1‑100 (MQ=38) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGt > 1:636430/1‑100 (MQ=38) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGt > 1:1113394/1‑100 (MQ=38) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGt > 1:1236959/1‑100 (MQ=38) gTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGt > 1:1929312/1‑100 (MQ=38) cGTTACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGa > 2:325846/1‑100 (MQ=38) cGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGa > 2:547573/1‑100 (MQ=38) cGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGa > 1:2044358/1‑100 (MQ=38) cGTAACAAGGTAACCGCAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTTATAGAAAGTGa > 2:1310347/1‑100 (MQ=255) gTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGaa > 2:1217072/1‑100 (MQ=38) gTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGaa > 1:691466/1‑100 (MQ=38) gTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCCTACTTAGTAGCGCTCACACAGATTGTCTGAAAGAAAGTGaa > 1:1399586/1‑100 (MQ=11) tAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGaaa < 1:2121627/100‑1 (MQ=35) aaCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGaaaa < 2:2334618/100‑1 (MQ=38) aaCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGaaaa < 1:1860622/100‑1 (MQ=38) aCAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAg < 2:1704348/100‑1 (MQ=38) aGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCaa > 1:793265/1‑100 (MQ=38) ggTAACCGTAGGGGAACCTGCGGTTGGATCACCGCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAg < 1:375521/100‑1 (MQ=38) gTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGCTTGTCTGATAGAAAGTGAAAAGCAAgg > 2:174510/1‑100 (MQ=38) gTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAgg > 1:1511197/1‑100 (MQ=38) AACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCg < 1:388638‑M1/100‑1 (MQ=255) | ACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCG > NC_000913/4168066‑4168264 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |