| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3943632 = | NA (NA) | 17 (0.220) | 10/164 | NT | 100% | intergenic (+122/‑72) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 3943636 = | 0 (0.000) | intergenic (+126/‑68) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
CTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCC > NC_000913/3943537‑3943735 | ccaccgtgtacgcttagtcgcttaacctcacaaccctaagatgtctctttcgattcatcatcgtgttgcgaaaatttgatagactcacgaacaactttcg < 2:1392968‑M2/1‑1 (MQ=255)ccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcg < 1:877597‑M2/1‑1 (MQ=255)ccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcg > 1:958167‑M2/100‑100 (MQ=255)ccaccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcg > 1:1625557‑M2/100‑100 (MQ=255) caccgtgtacgcttagtggcttaaccgcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgt < 2:1057021‑M2/2‑1 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgtt < 1:1388572‑M2/3‑1 (MQ=255) ccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcattgtgttgcgaaaatttgagagactcacgaacaactttcgttg < 2:1300905‑M2/4‑1 (MQ=255) cgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgt < 2:608083‑M2/5‑1 (MQ=255) cgtgtacgcttagtcgcttaacctcacaacacgaagatatttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcg > 2:1940538‑M2/96‑96 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgtt < 1:301043‑M2/6‑1 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgtt > 2:1202754‑M2/95‑100 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgtc > 1:1728131‑M2/95‑99 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc < 1:1599398‑M2/7‑1 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc < 2:324268‑M2/7‑1 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc < 1:1995526‑M2/7‑1 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc > 1:1319096‑M2/94‑100 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc < 1:976307‑M2/7‑1 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc < 2:411858‑M2/7‑1 (MQ=255) tgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcGTTGTTc < 1:584019‑M2/7‑1 (MQ=255) gtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcccaaatttgagagactcacgaacaactttcgtt > 2:2213000‑M2/93‑95 (MQ=255) acgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTg < 2:52428‑M2/10‑1 (MQ=255) cgcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTGa < 1:245258‑M2/11‑1 (MQ=255) gcttagtcgcttgacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTGAg < 1:125723‑M2/12‑1 (MQ=255) gcttagtcgcttaacctcgcaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgagaGTTGTTCGTGAg < 2:1484672‑M2/12‑1 (MQ=255) gcttagtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTGAg < 2:959511‑M2/12‑1 (MQ=255) cttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcactgaacaacgagaGTTGTTCGTGAg < 1:1806794‑M2/12‑1 (MQ=255) ttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTGAGtc < 1:1842543‑M2/14‑1 (MQ=255) gtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcactgaacaacgagaGTTGTTCGTGAGtctc < 1:1821140‑M2/16‑1 (MQ=255) gtcgcttaacctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTGAGtctct > 1:321625‑M2/84‑100 (MQ=255) cctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgagaGTTGTTCGTGAGTCTCTCAAATTTTc < 1:1496750‑M2/26‑1 (MQ=255) ctcacaacccgaagatgtttcttacgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgaaaGTTGTTCGTGAGTCTCTCAAATTTTCg < 2:321623‑M2/27‑1 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaacgagaGTTGTTCGTGAGTCTCTCAAATTTTCGCa < 1:1126517‑M2/29‑1 (MQ=255) tcacgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg > 1:781090‑M2/16‑100 (MQ=255) cacgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGt > 1:2083393‑M2/15‑100 (MQ=255) cacgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg > 2:1483998‑M2/15‑99 (MQ=255) cacgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGt > 1:1530247‑M2/15‑100 (MQ=255) cacgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGt > 1:1221851‑M2/15‑100 (MQ=255) cacgaacaactctcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGATAAGCGACTAAGCGt > 1:2347339‑M2/15‑100 (MQ=255) acgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa > 1:201586‑M2/14‑100 (MQ=255) acgaacaactctcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa > 2:697846‑M2/14‑100 (MQ=255) cgaacaactttcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac > 1:1722443‑M2/13‑100 (MQ=255) cgaacaactctcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac > 1:2307874‑M2/13‑100 (MQ=255) actctcGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg > 1:1077797‑M2/7‑100 (MQ=255) GTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc < 1:104583‑M2/100‑1 (MQ=255) GTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGcc > 1:1802652‑M2/1‑100 (MQ=255) | CTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCC > NC_000913/3943537‑3943735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |