New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 277706	NA (NA)	17 (0.140)	10/164	NT	NA	noncoding (32/67 nt)	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 277737	NA (NA)					noncoding (63/67 nt)	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/277608‑277706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  NC_000913/277737‑277632                                                                                                                                                                                                               CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTG                                                                                                           >  2:483545/1‑100   CGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCC                                                                                                         <  1:1137688/100‑1   CGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGACTGATAAGCGCAGCGCATCAGGCATTGCC                                                                                                         >  1:483440/1‑100    GCCTGCGGATATCGCTGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCG                                                                                                        <  1:3760912/100‑1    GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCG                                                                                                        <  2:2659175/100‑1    GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCG                                                                                                        <  1:3799220/100‑1     CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  2:1291620/100‑1     CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       >  1:2380405/1‑100     CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  1:1212967/100‑1      CTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGA                                                                                                      <  1:2031390/100‑1        GCGGATATCGCCGCGTTAAAAGCTCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATA                                                                                                    <  2:440747/100‑1                            AGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCC                                                                                <  1:1416666/100‑1                            AGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCC                                                                                <  2:1408699/100‑1                              CGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGG                                                                              <  1:2625236/100‑1                              CGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGG                                                                              <  2:2747165/100‑1                               GCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGC                                                                             <  1:2979000/100‑1                               GCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGC                                                                             <  2:3563376/100‑1                               GCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGC                                                                             <  2:262261/100‑1                               GCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGC                                                                             <  2:2895956/100‑1                                 GAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAA                                                                           <  1:3561665/100‑1                                  AAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAAT                                                                          <  1:371097/100‑1                                  AAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAAT                                                                          <  1:1061924/100‑1                                  AAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAAT                                                                          <  2:118007/100‑1                                   AGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATG                                                                         <  1:1518665/100‑1                                    GCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGC                                                                        <  1:1263918/100‑1                                     CTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCC                                                                       <  1:2701964/100‑1                                        AGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGA                                                                    <  2:2523251/100‑1                                               ATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTG                                                             <  2:877196/100‑1                                                                                                    GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGC        >  1:1879641/1‑100                                                                                                    GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGC        >  1:749825/1‑100                                                                                                     CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATTAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       >  2:121020/1‑100                                                                                                     CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       <  1:4681/100‑1                                                                                                     CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       >  1:3780837/1‑100                                                                                                     CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       <  1:177217/100‑1                                                                                                     CCGGATAAGGCGCGTGTGCCGCCAGCCGGCAATGCCGGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       <  2:3636669/100‑1                                                                                                      CGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGACCGATGTAGACCCGATAAACCCTCAGCTTCGCGC      >  2:1749739/1‑100                                                                                                         ATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTT   <  1:3004322/100‑1                                                                                                         ATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTT   <  1:1201392/100‑1                                                                                                          TAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  1:644657/100‑1                                                                                                          TAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  2:896936/100‑1                                                                                                                                                                                                               CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/277608‑277706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  NC_000913/277737‑277632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.