New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 277706NA (NA)17 (0.140) 10/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 188 total aligned reads displayed.

CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805
                                                                                                   |                                                                                                   
ccacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCAtt                                                                                                     >  1:243797/1‑100 (MQ=255)
   cGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgcc                                                                                                  <  1:1137688‑M1/100‑4 (MQ=255)
   cGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGACTGATAAGCGCAGCGCATCAGGCATTgcc                                                                                                  >  1:483440‑M1/1‑97 (MQ=255)
    gCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccg                                                                                                 <  1:3799220‑M1/100‑5 (MQ=255)
    gCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccg                                                                                                 <  2:2659175‑M1/100‑5 (MQ=255)
         cGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATgg                                                                                            <  1:1517807/100‑1 (MQ=255)
          ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCCGGCAATGCCTGATgcg                                                                                           <  1:3440318/100‑3 (MQ=38)
          ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggc                                                                                           <  1:1598440/100‑1 (MQ=255)
           gATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcg                                                                                          >  1:1691925/1‑100 (MQ=255)
            atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  2:541862/100‑1 (MQ=255)
              atCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGca                                                                                       <  1:1296435/100‑1 (MQ=255)
                cgccgcTTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcacn                                                                                     <  2:3045939/100‑2 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCGTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     <  1:1359628/100‑1 (MQ=255)
                 ggcgcgTAAAAAGCGCGAAGCCAAGTTTGGATCGGGTCGACAGCGGCCAATGCAGGCCTGATAAGCGCAGCGCAGCAGGCAGTGCCGGATGGCGGcac                                                                                      >  2:2223609/3‑98 (MQ=16)
                 gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACaa                                                                                    >  2:2246844/1‑100 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  1:1986590/100‑1 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  1:3012818/100‑1 (MQ=255)
                       ttAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCt                                                                              <  2:243797/100‑1 (MQ=255)
                       ttAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCt                                                                              <  2:1258710/100‑1 (MQ=255)
                         aaaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTA                                                                            <  2:896936‑M2/100‑1 (MQ=255)
                         aaaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTA                                                                            <  1:644657‑M2/100‑1 (MQ=255)
                          aaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTAT                                                                           <  1:1201392‑M2/100‑1 (MQ=255)
                            aGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatcc                                                                         <  1:1416666‑M1/100‑29 (MQ=255)
                             gcgcGAAGCTGAGGGTTTATCGGGTCTACATCGGTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCG                                                                        >  2:1749739‑M2/1‑100 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCCGGCATTGCCGGCTGGCGGCACACGCGCCTTATCCGG                                                                       <  2:3636669‑M2/100‑1 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccgg                                                                       <  2:2747165‑M1/100‑31 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccgg                                                                       <  1:2625236‑M1/100‑31 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       <  1:4681‑M2/100‑1 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       >  1:3780837‑M2/1‑100 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       <  1:177217‑M2/100‑1 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggc                                                                      <  2:2895956‑M1/100‑32 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggc                                                                      <  2:262261‑M1/100‑32 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      >  1:1879641‑M2/1‑100 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  1:2495884/100‑1 (MQ=255)
                                cgAAGCTGAGGGTCTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCCCAAGCGCCTTATCCGGcc                                                                     >  2:3096284/1‑100 (MQ=255)
                                  aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaat                                                                   <  2:118007‑M1/100‑35 (MQ=255)
                                  aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaat                                                                   <  1:1061924‑M1/100‑35 (MQ=255)
                                  aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaat                                                                   <  1:371097‑M1/100‑35 (MQ=255)
                                    gCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                                                 <  1:1336375/100‑1 (MQ=255)
                                    gCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                                                 <  1:1524319/100‑1 (MQ=255)
                                    gCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                                                 >  2:1409019/1‑100 (MQ=255)
                                       gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                                              >  2:2823209/1‑100 (MQ=255)
                                       gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                                                 <  2:1585756/97‑1 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcctga                                                             <  2:2523251‑M1/100‑41 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  2:1204319/100‑1 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  1:3337324/100‑1 (MQ=255)
                                           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                          <  2:709006/100‑1 (MQ=255)
                                            tttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcaca                                                         >  2:1711987/1‑100 (MQ=255)
                                               aTCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcctgatgcgctg                                                      <  2:877196‑M1/100‑48 (MQ=255)
                                                  gggTCTACATCGTTCATTGTAGGCCTGCTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGt                                                   >  1:1457175/1‑100 (MQ=255)
                                                    gTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTa                                                 <  1:279760/100‑1 (MQ=255)
                                                      ccgatctgTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATg                                               <  2:1314731/93‑1 (MQ=255)
                                                      cTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATg                                               <  2:3308740/100‑1 (MQ=255)
                                                       tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                              <  2:695307/100‑1 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGcc                                             >  1:770235/1‑100 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                              >  1:3260474/1‑99 (MQ=255)
                                                         cATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  1:2246858/100‑1 (MQ=255)
                                                         cATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  1:2026979/100‑1 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                        >  1:2066851/1‑100 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCAGCCTACAAAACCACAAAACGTTACGCCGCa                                          >  2:676061/1‑98 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    <  1:126029/100‑1 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    >  1:2959202/1‑100 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGc                                     >  2:3722821/1‑99 (MQ=255)
                                                                   tGTAGGCCTGCTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg                                  <  2:3183255/100‑1 (MQ=255)
                                                                   tGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg                                  >  1:3162427/1‑100 (MQ=255)
                                                                    gTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGa                                 <  1:2098436/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              <  2:3366506/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  1:1317069/1‑100 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              <  1:2988427/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCACTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAACACGTTATGCCGCATCCGCCAGaaca                              <  2:3461008/100‑1 (MQ=255)
                                                                         ccTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaa                            <  2:1067921/100‑1 (MQ=255)
                                                                            gATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACAt                         <  1:3384953/100‑1 (MQ=255)
                                                                              tAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGc                       >  1:67339/1‑100 (MQ=255)
                                                                                agcgcagcgcATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                     <  1:2732895/100‑1 (MQ=255)
                                                                                 gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGcctt                    <  1:2590558/100‑3 (MQ=255)
                                                                                 gcgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGt                    >  1:3087751/1‑100 (MQ=255)
                                                                                  cgcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTa                   <  1:165233/100‑1 (MQ=255)
                                                                                   gcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTAc                  <  2:4681/100‑1 (MQ=255)
                                                                                   gcagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTAc                  >  2:3526143/1‑100 (MQ=255)
                                                                                    cagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACg                 <  2:1825574/100‑1 (MQ=255)
                                                                                    cagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACg                 >  2:1735124/1‑100 (MQ=255)
                                                                                    cagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACg                 <  1:3272090/100‑1 (MQ=255)
                                                                                    cagcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGACTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACg                 >  1:2693107/1‑100 (MQ=255)
                                                                                     agcgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACg                 <  2:1916361/99‑1 (MQ=255)
                                                                                        gcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatg             <  1:3737215/100‑1 (MQ=255)
                                                                                           tCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccct          <  2:2523251‑M2/100‑61 (MQ=255)
                                                                                            cAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAtt         <  1:1313326/100‑1 (MQ=255)
                                                                                              ggCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcag       <  1:2701964‑M2/100‑64 (MQ=255)
                                                                                              ggCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTc       >  2:3034645/1‑100 (MQ=255)
                                                                                               gCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagc      <  1:1263918‑M2/100‑65 (MQ=255)
                                                                                               gCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAGACCGTGATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCa      <  2:154495/100‑1 (MQ=255)
                                                                                                cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagct     <  1:1518665‑M2/100‑66 (MQ=255)
                                                                                                cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     >  1:3651503/1‑100 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  2:118007‑M2/100‑67 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  1:1061924‑M2/100‑67 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  1:2329776/100‑1 (MQ=255)
                                                                                                  ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttc   <  1:3561665‑M2/100‑68 (MQ=255)
                                                                                                  ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGTCGTACGGATGGATTTCAAGa   <  2:2341373/100‑1 (MQ=255)
                                                                                                   tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  1:2631225/100‑1 (MQ=255)
                                                                                                   tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCAAGAACAAACATGCCGTACGGATGGATTTCAAGat  >  2:3714299/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.