| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 900753 = | NA (NA) | 11 (0.090) | 8/164 | NT | NA | noncoding (5/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 900783 = | NA (NA) | noncoding (35/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/900858‑900753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > NC_000913/900783‑900881 GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTA > 1:563100/1‑100 CGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTAT > 1:1575734/1‑100 CGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTAT > 1:1719053/1‑100 CGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTAT < 1:3280778/100‑1 ACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCG < 2:3420869/100‑1 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG < 2:2757150/100‑1 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG < 2:3236891/100‑1 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG > 1:588375/1‑100 CATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGG > 2:3746938/1‑100 CGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCT > 1:3733395/1‑100 GACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACC > 2:3518010/1‑100 CGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCCAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCC > 1:3205398/1‑100 CGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCC > 2:3712844/1‑100 CTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGC > 1:1249281/1‑100 GTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGA > 1:2152360/1‑100 GTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGA > 2:478879/1‑100 TGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGGCTTATCAGACCTACAAAA‑CCCCCCGGCGAA > 1:1714089/1‑100 GCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAAT > 1:69380/1‑100 GCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAAT > 1:3241655/1‑100 CCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATG < 1:478884/100‑1 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCCGGCGAATGTACGCAGCCACATTAATTTCGC > 2:1239341/1‑100 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCC > 2:1578845/1‑100 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCC > 2:2639520/1‑100 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCC > 1:2240236/1‑100 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCC < 1:1520271/100‑1 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGACTGTACGCAGCCACATTAATTTCGCCG > 2:1256000/1‑100 GGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGAGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCCAATGTACGCAGCCACATTAATTTCGCCGTT > 2:2030836/1‑100 GCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTC < 1:2308401/100‑1 CACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG < 2:1605737/100‑1 CACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG < 2:1050155/100‑1 GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/900858‑900753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > NC_000913/900783‑900881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |