New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3235921	113 (0.830)	21 (0.170)	8/162	NT	16.6%	intergenic (‑46/‑39)	rlmG/ygjP	23S rRNA m(2)G1835 methyltransferase, SAM‑dependent/putative metal dependent hydrolase
	?	NC_000913	= 3235931	109 (0.880)					intergenic (‑56/‑29)	rlmG/ygjP	23S rRNA m(2)G1835 methyltransferase, SAM‑dependent/putative metal dependent hydrolase

CATCCGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3235815‑3235921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagggtATACTCACGCACCCTTTTCAGGGGCAATGTCGAAATTTTATCATTCAGGAGGGCCGATGAGCCACTTAGACAACGGTTTCCGTTCACTGACACTACAA  <  NC_000913/3235931‑3235834                                                                                                                                                                                                               CATCCGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGA                                                                                                           >  2:814862/1‑100   TCCGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAA                                                                                                         >  1:1678110/1‑100    CCGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAg                                                                                                        >  2:545734/1‑99     CGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAG                                                                                                       >  1:1677465/1‑100     CGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAG                                                                                                       <  1:297803/100‑1     CGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCAGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTAAAAA                                                                                                        >  2:1218315/1‑99      GTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGG                                                                                                      >  1:3282008/1‑100       TCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGG                                                                                                     <  1:902437/100‑1       TCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGG                                                                                                     <  1:3729972/100‑1        CGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGT                                                                                                    <  1:2652615/100‑1        CGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGT                                                                                                    >  1:3468714/1‑100        CGCCGGAAAACGTTGTAGTGTCAGGGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGT                                                                                                    <  2:1822163/100‑1         GCCGGACGACTTTGTAGTGTCAGGAAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAA                                                                                                        <  2:1061139/95‑1          CCGGAAAACGTTGTAGTGGCAGTGCACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGG                                                                                                     <  2:3239656/97‑1                      GTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCTTCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCC                                                                                      <  2:2072705/100‑1                           GTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTC                                                                                 <  1:794544/100‑1                            TCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCA                                                                                <  2:671049/100‑1                            TCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCA                                                                                <  1:1478791/100‑1                             CAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCTTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAG                                                                               <  2:448796/100‑1                             CAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAG                                                                               <  1:1360199/100‑1                             CAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAG                                                                               <  1:2242707/100‑1                              AGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGG                                                                              <  1:2312782/100‑1                              AGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGG                                                                              <  2:258076/100‑1                              AGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGG                                                                              <  1:2946097/100‑1                               GTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGG                                                                             <  1:3270002/100‑1                               GTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGG                                                                             <  1:1039140/100‑1                               GTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGG                                                                             <  2:2930456/100‑1                               GTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGG                                                                             <  2:2020192/100‑1                                TGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGCATGATCAACCTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGGG                                                                            <  2:1270020/100‑1                                TGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGGG                                                                            <  1:807492/100‑1                                TGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGGG                                                                            <  1:3711210/100‑1                                TGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGG                                                                             <  2:1290975/99‑1                                TGAACGGAAACCGTTGTCTAAGTGGCTCACCGGCCCTAATGAATGATAAAATTTCGCCCTTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGGG                                                                            <  2:1270220/100‑1                                 GAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGTATACTCACGCACCCTTTTCAGGGGC                                                                           <  2:2947259/100‑1                                   ACGGAAACCGTTGTCTAAGTGGCTCATCCGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGACAAGGGTATACTCACGCACCCTTTTCAGGG                                                                             <  2:3497570/96‑1                                                                                                     AAAGGGTATACTCACGCACCCTTTTGAGGGGCAATGTCGAAATTTTATCATTCAGGAGGGCCGATGAGCCACTTAGACAACGGTTTCCGTTCACTGACAC       <  2:1116043/100‑1                                                                                                       AGGGTATACTCACGCACCCTTTTCAGGGGCAATGTCTAAATTTTATCATTCAGGAGGGCCGATGAGCCACTTAGACAACGGTTTCCGTTCACTGACACTA     <  2:292275/100‑1                                                                                                        GGGTATACTCACGCACCCTTTTCAGGGGCAATGTCGAAATTTTATCATTCAGGAGGGCCGATGAGCCACTTAGACAACGGTTTCCGTTCACTGACACTAC    <  1:1646852/100‑1                                                                                                         GGTATACTCACGCACCCTTTTCAGGGGCAATGTCGAAATTTTATCATTCAGGCGGGCCGATGAGCCCCTTAGACAACGGTTTCCGTTCACTGACACTACA   >  1:1089791/1‑100                                                                                                          GTATACTCACGCACCCTTTTCAGGGGCAATGTCGAAATTTTATCATTCAGGAGGGCCGATGAGCCACTTAGACAACGGTTTCCGTTCACTGACACTACAA  <  1:1760272/100‑1                                                                                                                                                                                                               CATCCGTCGCCGGAAAACGTTGTAGTGTCAGTGAACGGAAACCGTTGTCTAAGTGGCTCATCGGCCCTCCTGAATGATAAAATTTCGACATTGCCCCTGAAAAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3235815‑3235921 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagggtATACTCACGCACCCTTTTCAGGGGCAATGTCGAAATTTTATCATTCAGGAGGGCCGATGAGCCACTTAGACAACGGTTTCCGTTCACTGACACTACAA  <  NC_000913/3235931‑3235834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.