New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4635629	155 (1.130)	6 (0.050)	4/166	NT	3.8%	coding (109/474 nt)	creA	putative periplasmic protein
	?	NC_000913	= 4635693	161 (1.260)					coding (173/474 nt)	creA	putative periplasmic protein
Rejected: Frequency below cutoff threshold.

ATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4635526‑4635629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACCGA  <  NC_000913/4635693‑4635596                                                                                                                                                                                                            ATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGC                                                                                                        >  1:3067888/1‑100    CAAGCATTTGATTCTGTCTTTAAGCCTGATAATGCGGGGGCCATTGGCTCATGAAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGCCC                                                                                                       >  2:746686/1‑98    CAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATTCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATAGGCCC                                                                                                      >  2:2575215/1‑99    CAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCG                                                                                                     <  1:432638/100‑1         ATTTGATCCTGTCTTTAAGCCTGATAATGATGGGGCGATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGG                                                                                                    >  2:894284/1‑96                                                               AGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTT                                          <  1:1240815/100‑1                                                                            CGACACCGTATTTAAAATGATCGGCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCC                             <  1:2034972/100‑1                                                                            CGACACCGTATTTAAAATGATCGGCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCC                             <  2:2164516/100‑1                                                                            CGACACCGTATTTAAAATGATCGGCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCC                             <  1:1489092/100‑1                                                                            CGACACCGTATTTAAAATGATCGGCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGC                              <  1:755425/99‑1                                                                              ACACCGTATTTAAAATGATCGGCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGA                           <  1:1660676/100‑1                                                                                                   nCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGA      >  2:35724/2‑100                                                                                                   GCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGA      >  1:3328079/1‑100                                                                                                   GCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGA      >  2:2020292/1‑100                                                                                                   GCCCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGA      >  2:297013/1‑100                                                                                                     CCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACC    <  1:211247/100‑1                                                                                                     CCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACC    <  1:3480546/100‑1                                                                                                     CCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACC    <  2:3026141/100‑1                                                                                                     CCGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACC    >  1:1040629/1‑100                                                                                                      CGGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACCG   >  2:1733519/1‑100                                                                                                       GGCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACCGA  <  2:3553475/100‑1                                                                                                                                                                                                            ATACAAGCATTTGATCCTGTCTTTAAGCCTGATAATGCTGGGGCCATTGGCTCATGCAGAAGAGATTGGTTCGGTCGACACCGTATTTAAAATGATCGGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4635526‑4635629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggCTCACATAACAGGTGACATTTTTCACATCGGGATCATCAAAGGCTTCCACAACAATTTTGTGATCCGGGCCGATCATTTTAAATACGGTGTCGACCGA  <  NC_000913/4635693‑4635596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.