New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 349605 =NA (NA)17 (0.140) 7/164 NT NA noncoding (1/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349637 = NA (NA)noncoding (33/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

Only 100 of 229 total aligned reads displayed.

AAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT  >  NC_000913/349506‑349704
                                                                                                   |                                                                                                   
 cgtaggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagg                                                                                                     >  1:1806271‑M1/99‑99 (MQ=255)
  gtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcgacgctatccgtcttatccgacctacagttcagtgcacctcgtagGcc                                                                                                   >  1:3567135‑M1/98‑100 (MQ=255)
  gtaggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGcc                                                                                                   >  1:1943839‑M1/98‑100 (MQ=255)
  gCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGcc                                                                                                   >  1:2862767/1‑100 (MQ=255)
      gcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGAt                                                                                               >  1:1346266‑M1/94‑100 (MQ=255)
      cAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGAt                                                                                               >  2:2155708/1‑100 (MQ=255)
          tactacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTGTTCGACAGCCGATGCCTGATGCGt                                                                                           >  2:1825641/1‑100 (MQ=255)
           actacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGAt                                                                                               <  2:614706/95‑1 (MQ=255)
           actacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTc                                                                                          >  1:47690/1‑100 (MQ=255)
             tacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGc                                                                                        <  2:1032263/100‑1 (MQ=255)
              acCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCt                                                                                       <  2:2092221/100‑1 (MQ=255)
              acCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCt                                                                                       >  2:1120553/1‑100 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      >  1:3316736/1‑100 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      >  1:102483/1‑100 (MQ=255)
               ccAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTg                                                                                      >  1:240128/1‑100 (MQ=255)
                cAGTACGAAGAGAAGCGCGACATCTTGTTTTCCTGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGa                                                                                     <  2:3800624/100‑1 (MQ=255)
                    aCGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGAcgcg                                                                                 >  1:2662270/1‑100 (MQ=255)
                    aCGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGAcgcg                                                                                 <  1:2329104/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  2:1906712/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  1:1885335/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  2:2244934/100‑1 (MQ=255)
                       aaGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACt                                                                              <  2:555599/100‑1 (MQ=255)
                       aaGAGAAGCTCGACAACCTGTGTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  1:2612918/99‑1 (MQ=255)
                        agagAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACtt                                                                             <  2:3150228/100‑1 (MQ=255)
                         gagaAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTa                                                                            <  1:3361117/100‑1 (MQ=255)
                           gaAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATc                                                                          <  2:2988979/100‑1 (MQ=255)
                           gaAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGATGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGCCGCGACTTATc                                                                          >  1:1765893/1‑100 (MQ=255)
                            cgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCa                                                                         >  1:503173‑M1/72‑100 (MQ=255)
                             gcatcaggcatcgtttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAg                                                                        >  1:1131875‑M1/71‑100 (MQ=255)
                             gcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagACCTGATGCGTCGCTGACGCGACTTATCAg                                                                        >  2:733866‑M1/71‑100 (MQ=255)
                             aGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAg                                                                        >  1:2738726/1‑100 (MQ=255)
                             aGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAg                                                                        >  1:3740625/1‑100 (MQ=255)
                              gCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       >  1:1679595/1‑100 (MQ=255)
                              catcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATAAGTCGCTGACGCGACTTATc                                                                          >  2:2663918‑M1/70‑97 (MQ=255)
                               cTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      <  1:3015504/100‑1 (MQ=255)
                               cTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      <  2:2022241/100‑1 (MQ=255)
                               atcaggcatcggttgtcggatgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtagGCCTGATGCGCCGCTGACGCGACTTATCAGGc                                                                      >  1:127374‑M1/69‑100 (MQ=255)
                               atcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      >  1:2310329‑M1/69‑100 (MQ=255)
                                tCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGcc                                                                     <  1:689804/100‑1 (MQ=255)
                                   aCAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTAc                                                                  <  1:1849429/100‑1 (MQ=255)
                                      atcggttgtcggatgcgacgctatgcgtcttatccgacctacagttcagtgcaccccgtagGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTacggg                                                               >  2:987321‑M1/62‑98 (MQ=255)
                                      aCCTGTTTGCCCGTAGCCAGGTGAAATAAAACACGCCCGTTGATTGTCTTCGCCAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGa                                                                <  2:1271105/99‑1 (MQ=255)
                                      aCCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAg                                                               >  1:383362/1‑100 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              <  1:1974066/100‑1 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              >  1:2103933/1‑100 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              <  2:1852591/100‑1 (MQ=255)
                                        cTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGt                                                             <  2:2879903/100‑1 (MQ=255)
                                        cTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGt                                                             <  1:1397457/100‑1 (MQ=255)
                                          gTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGc                                                           >  1:3197009/1‑100 (MQ=255)
                                          gTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGc                                                           >  1:3601441/1‑100 (MQ=255)
                                             tGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACt                                                        <  2:1943295/100‑1 (MQ=255)
                                             tGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACt                                                        >  1:2507531/1‑100 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       <  1:2188384/100‑1 (MQ=255)
                                                  gTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACt                                                   <  1:1540859/100‑1 (MQ=255)
                                                    aGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGt                                                 <  2:2583699/100‑1 (MQ=255)
                                                     gCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTa                                                <  1:747898/100‑1 (MQ=255)
                                                     cgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATAAGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTa                                                >  1:1428546‑M1/47‑100 (MQ=255)
                                                      ccAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAg                                               <  1:1582424/100‑1 (MQ=255)
                                                      ccAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAg                                               <  2:2401546/100‑1 (MQ=255)
                                                         ggTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTC                                            >  1:943656‑M1/1‑100 (MQ=255)
                                                         ggTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGACCTACGAGGTGCACTGAACTGTAGGTC                                            <  1:642747‑M1/100‑1 (MQ=255)
                                                             aaaTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGAT                                        >  1:3109101‑M1/1‑100 (MQ=255)
                                                               aTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATaa                                      >  2:640925/1‑100 (MQ=255)
                                                               aTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACGTATCAGGCGTACGTGGTGCACTGAACGGTAGGTGGGAT                                        >  2:318034‑M1/1‑98 (MQ=255)
                                                                tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAg                                     >  2:1648347/1‑100 (MQ=255)
                                                                tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAg                                     <  1:80507/100‑1 (MQ=255)
                                                                tAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAg                                     <  1:148566/100‑1 (MQ=255)
                                                                  aaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGAc                                   >  2:846898/1‑100 (MQ=255)
                                                                     aaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGa                                <  1:42274/100‑1 (MQ=255)
                                                                      aCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGAt                               <  2:1042272/100‑1 (MQ=255)
                                                                       cGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                              >  1:2638552/1‑100 (MQ=255)
                                                                        gCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGCCGGa                                >  1:3271216/1‑97 (MQ=255)
                                                                        gCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATgg                             >  1:649235/1‑100 (MQ=255)
                                                                        gCCCGTTGATTGTATTCGACAGCCGATGCCGGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATgg                             <  2:2710385/100‑1 (MQ=255)
                                                                            gTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATGAGACGGATGGCGTc                         >  2:2599053/1‑100 (MQ=255)
                                                                            gTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTc                         <  2:3141177/100‑1 (MQ=255)
                                                                              tGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGc                       >  1:2918328/1‑100 (MQ=255)
                                                                               gATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCa                      <  1:105737‑M2/100‑2 (MQ=255)
                                                                                aTTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATCGGGACGCa                      >  2:1350413/1‑99 (MQ=255)
                                                                                 ttGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATAGCGTCGCatc                    <  2:2356808‑M2/100‑4 (MQ=255)
                                                                                   gTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCatccg                  >  1:2956119‑M2/1‑95 (MQ=255)
                                                                                   gTATCCGACAGCCGATGCCTGATACGACGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGATCGGATAAGACGCCGCGCGTCGCATCCg                  >  2:1198695/1‑100 (MQ=11)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgac                <  2:3088431‑M1/100‑25 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCatccgac                >  1:99854‑M2/1‑93 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCatccgac                >  2:1750130‑M2/1‑93 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCatccgac                >  1:834674‑M2/1‑93 (MQ=255)
                                                                                      ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGACTTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGAATAGCGTCGCATCCGACa               >  1:1510136/1‑100 (MQ=14)
                                                                                       tCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgacct              <  2:444183‑M1/100‑27 (MQ=255)
                                                                                       tCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgacct              <  2:2798787‑M1/100‑27 (MQ=255)
                                                                                       tCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACaa              <  2:41813/100‑1 (MQ=255)
                                                                                        cGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgaccta             <  2:1604765‑M1/100‑28 (MQ=255)
                                                                                        cGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAAc             >  1:3427627/1‑100 (MQ=255)
                                                                                         gACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGGCAAcc            <  2:3318440/100‑1 (MQ=255)
                                                                                         gACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAAcc            >  1:3666139/1‑100 (MQ=255)
                                                                                         gACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATgcgacgctatgcgtcttatccgacctac            <  2:3601951‑M1/100‑29 (MQ=255)
                                                                                             gCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATg        >  1:3705805/1‑100 (MQ=255)
                                                                                             gCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATg        >  1:3522576/1‑100 (MQ=255)
                                                                                             gCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGCATGGCGTCGCATCCGACAACCGa          >  2:3464785/1‑98 (MQ=255)
                                                                                               cGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGcc      <  1:2258055/100‑1 (MQ=255)
                                                                                                   GCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAt  >  2:3405766‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT  >  NC_000913/349506‑349704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.