New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2538656	NA (NA)	3 (0.030)	4/174	NT	NA	intergenic (+173/+16)	yfeS/cysM	WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B)
	?	NC_000913	3563536 =	NA (NA)					intergenic (+18/+251)	glpD/yzgL	sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology

TTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2538582‑2538656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAT  >  NC_000913/3563536‑3563633                                                                                                                                                                               TTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGTGTTTGTCATCAGTCTCAGGTCAGATTTCAATCTGGCCTGAG                                                                           <  1:60957/100‑1                            CCTGATAAGCGTAGCGCATCAGGCAGTTTTGTGTTTGTCATCAGTCTCAGGCCAGATTGAAATCTGACCTGAGACTGATGACAAACACAAAACTGCCTGA                                                >  1:832612/1‑100                                   AGCGTAGCGCATCAGGCAGTTTTGTGTTTGTCATCAGTCTCAGGCCAGATTGAAATCTGACCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTA                                         >  1:1600839/1‑100                                                                        TCTCAGGCCAGATTGAAATCTGACCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTGATGCAATATATTGA    >  2:1770680/1‑100                                                                        TCTCAGGCCAGATTGAAATCTGACCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAAGCCTAAGTAGTTTATGCAATATATT      >  2:481788/1‑98                                                                         CTCAGGCCAGATTGAAATCTGACCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTAGTTTATGCAATATATTGAA   >  2:1456511/1‑100                                                                          TCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAGCACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAA   <  2:358022/99‑1                                                                          TCAGGCCAGATTGAAATCTGACCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAT  >  1:2214721/1‑100                                                                                                                                                                               TTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2538582‑2538656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAT  >  NC_000913/3563536‑3563633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.