New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2538656NA (NA)3 (0.030) 4/174 NT NA intergenic (+173/+16) yfeS/cysM WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B)
?NC_000913 3563536 = NA (NA)intergenic (+18/+251) glpD/yzgL sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology

ATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATCG  >  NC_000913/2538558‑2538754
                                                                                                  |                                                                                                  
aTCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTcc                                                                                                   <  2:268917/100‑1 (MQ=255)
aTCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTcc                                                                                                   >  1:2360525/1‑100 (MQ=255)
  ccGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGa                                                                                                 >  1:2273507/1‑100 (MQ=255)
   cGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAt                                                                                                <  2:2339502/100‑1 (MQ=255)
     gCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGc                                                                                              >  1:2164953/1‑100 (MQ=255)
         aCAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAtt                                                                                          >  1:1020004/1‑100 (MQ=255)
         aCAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAtt                                                                                          >  1:510931/1‑100 (MQ=255)
          cAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTa                                                                                         >  2:1881324/1‑100 (MQ=255)
           aaaaTCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTaa                                                                                        >  2:437843/1‑100 (MQ=255)
                cGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCtt                                                                                   <  2:441023/100‑1 (MQ=255)
                    cTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAAt                                                                               >  1:1864078/1‑100 (MQ=255)
                    cTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAAt                                                                               >  1:442501/1‑100 (MQ=255)
                      aaTTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATcc                                                                             >  2:276204/1‑100 (MQ=255)
                        ttCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGTGTTTGTCATCAGTCTCaggtcagatttcaatctggcctgag                                                                           <  1:60957‑M1/100‑26 (MQ=255)
                         tCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCg                                                                          <  1:1423731/100‑1 (MQ=255)
                             tatatTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGcccc                                                                      >  1:1804590/1‑100 (MQ=255)
                             tatatTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGcccc                                                                      <  2:1220390/100‑1 (MQ=255)
                               tatTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCt                                                                    >  1:216772/1‑100 (MQ=255)
                                atTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTg                                                                   >  2:389083/1‑100 (MQ=255)
                                atTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTg                                                                   <  2:1466072/100‑1 (MQ=255)
                                  tGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGc                                                                 <  2:429731/100‑1 (MQ=255)
                                  tGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGc                                                                 <  2:510927/100‑1 (MQ=255)
                                   gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGc                                                                 >  2:1205470/1‑99 (MQ=255)
                                   gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCt                                                                >  1:198828/1‑100 (MQ=255)
                                    cAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTTCTTTTTTTATCTGTCTCCGATGCTGTTAATCCTTAAATTCCCGCCTCCTggat                                                                >  2:1383146/1‑97 (MQ=21)
                                    cAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCt                                                                >  2:433959/1‑99 (MQ=255)
                                    cAGAAACCTTGTAGGCCTGATAAGCGGAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTa                                                               >  1:1582207/1‑100 (MQ=255)
                                        aaCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAAt                                                           <  1:2462927/100‑1 (MQ=255)
                                          ccTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGc                                                         >  1:1672568/1‑100 (MQ=255)
                                          ccTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGc                                                         >  1:485447/1‑100 (MQ=255)
                                           cTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGct                                                        >  1:2140080/1‑100 (MQ=255)
                                            ttGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGctc                                                       <  1:1831690/100‑1 (MQ=255)
                                             tGTAGACCTGATAAGCGTAGCGCATCAGGCAGTTTTTCGTTTTTCATCAGTCTCCGATGCTATTAATCCTTAAAACCCCGCCCCCTGGCTAAAATGctct                                                      <  2:1003035/100‑1 (MQ=25)
                                                 ggCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTccc                                                  >  1:969034/1‑100 (MQ=255)
                                                   ccTGATAAGCGTAGCGCATCAGGCAGTTTTGTGTTTGTCATCAGTCTCaggccagattgaaatctgacctgagactgatgacaaacacaaaactgcctga                                                >  1:832612‑M1/1‑48 (MQ=255)
                                                   ccTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCa                                                >  2:1896708/1‑100 (MQ=255)
                                                   ccTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCa                                                >  2:2547815/1‑100 (MQ=255)
                                                    cTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCaa                                               >  1:2542765/1‑100 (MQ=255)
                                                     tGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCaaa                                              >  1:2170285/1‑100 (MQ=255)
                                                     tGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCaaa                                              >  1:93197/1‑100 (MQ=255)
                                                      gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAac                                             <  1:913671/100‑1 (MQ=255)
                                                      gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAac                                             <  1:364898/100‑1 (MQ=255)
                                                          aGCGTAGCGCATCAGGCAGTTTTGTGTTTGTCATCAGTCTCaggccagattgaaatctgacctgagactgatgacaaacacaaaactgcctgatgcgcta                                         >  1:1600839‑M1/1‑41 (MQ=255)
                                                           gCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACAcccc                                        >  2:194322/1‑100 (MQ=255)
                                                           gCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACAcccc                                        >  2:366532/1‑100 (MQ=255)
                                                           gCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACAcccc                                        >  2:693359/1‑100 (MQ=255)
                                                           gCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACAcccc                                        >  1:2020728/1‑100 (MQ=255)
                                                                gcgcATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAg                                   <  1:2460357/100‑1 (MQ=255)
                                                                 cgcATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGa                                  >  1:2183317/1‑100 (MQ=255)
                                                                   cATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGGAGaaa                                >  1:1168731/1‑100 (MQ=255)
                                                                      cAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGt                             >  1:599864/1‑100 (MQ=255)
                                                                       aGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTa                            >  1:2143847/1‑100 (MQ=255)
                                                                        ggCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAg                           >  2:611142/1‑100 (MQ=255)
                                                                        ggCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAg                           >  1:66715/1‑100 (MQ=255)
                                                                         gCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGc                          <  2:1334399/100‑1 (MQ=255)
                                                                          cAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCg                         <  1:90422/100‑1 (MQ=255)
                                                                              tttGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCg                     >  1:2001455/1‑100 (MQ=255)
                                                                                tGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGcc                   <  2:1252177/100‑1 (MQ=255)
                                                                                tGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGcc                   <  2:2170273/100‑1 (MQ=255)
                                                                                   gTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACg                >  1:2247364/1‑100 (MQ=255)
                                                                                   gTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACg                >  1:209973/1‑100 (MQ=255)
                                                                                       gTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCg            >  2:1174730/1‑100 (MQ=255)
                                                                                       gTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCg            <  1:1728105/100‑1 (MQ=255)
                                                                                          atcaGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAg         <  2:1962763/100‑1 (MQ=255)
                                                                                          atcaGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAg         >  2:557029/1‑100 (MQ=255)
                                                                                           tcaGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAga        >  2:1445903/1‑100 (MQ=255)
                                                                                           tcaGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAga        <  1:1292869/100‑1 (MQ=255)
                                                                                             aGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAgatg      >  1:2314822/1‑100 (MQ=255)
                                                                                               tctcaggccagattgaaatctgacctgagactgatgacaaacacaaaactgcctgatgcgctacgcttatcaggcctacgtggttgatgcaatatattga    >  2:1770680‑M1/1‑4 (MQ=255)
                                                                                               tctcaggccagattgaaatctgacctgagactgatgacaaacacaaaactgcctgatgcgctacgcttatcaagcctaagtagtttatgcaatatatt      >  2:481788‑M1/1‑4 (MQ=255)
                                                                                                ctcaggccagattgaaatctgacctgagactgatgacaaacacaaaactgcctgatgcgctacgcttatcaggcctacgtagtttatgcaatatattgaa   >  2:1456511‑M1/1‑3 (MQ=255)
                                                                                                ctcCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATc   >  1:402366/1‑100 (MQ=255)
                                                                                                 tcaggtcagatttcaatctggcctgagactgatgacaagcacaaaactgcctgatgcgctacgcttatcaggcctacgtggtttatgcaatatattgaa   <  2:358022‑M1/99‑98 (MQ=255)
                                                                                                 tcaggccagattgaaatctgacctgagactgatgacaaacacaaaactgcctgatgcgctacgcttatcaggcctacgtggtttatgcaatatattgaat  >  1:2214721‑M1/1‑2 (MQ=255)
                                                                                                 tcCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATCg  >  1:1923808/1‑100 (MQ=255)
                                                                                                 tcCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATCg  <  2:1497048/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
ATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATCG  >  NC_000913/2538558‑2538754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.