New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2808135 =	NA (NA)	9 (0.100)	6/164	NT	NA	noncoding (5/84 nt)	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	2808165 =	NA (NA)					noncoding (35/84 nt)	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2808238‑2808135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA  >  NC_000913/2808165‑2808263                                                                                                                                                                                                             TTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGCAGCGCCAGCGTCGCAGCAGGCATTGTGAACAGAACGGCGGATGCGGGAAAAACGCCTTAT                                                                                                          >  2:240067/1‑99   GTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCAGATGCGGCAAAAACGCCTTAT                                                                                                          >  2:1403677/1‑97    TTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGC                                                                                                      >  2:1329703/1‑100     TGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC                                                                                                     <  2:1900985/100‑1                                                                    ACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCA                                      >  1:1965542/1‑100                                                                       GAACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCTACTCTGGCGAGTCTTATCATGCCTACAAACCACATCGCACAT                                   >  2:1826651/1‑100                                                                        AACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATT                                  >  1:120610/1‑100                                                                         ACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTT                                 >  2:2187687/1‑100                                                                         ACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTT                                 >  1:161508/1‑100                                                                         ACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTT                                 >  1:1688097/1‑100                                                                          CGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTC                                >  1:1005930/1‑100                                                                           GGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCA                               >  1:1355609/1‑100                                                                           GGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCA                               >  2:644062/1‑100                                                                                                  ATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATAT        >  2:2255246/1‑100                                                                                                  ATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATAT        >  2:2255479/1‑100                                                                                                    tctCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCAATCTTTCATCCCATATTC      <  2:1261123/97‑1                                                                                                     CGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCA     <  2:984996/100‑1                                                                                                     CGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCA     <  1:1506993/100‑1                                                                                                       CCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCAATCTTTCATCCCATATTCAga   >  1:1261129/1‑98                                                                                                        CGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA  <  1:1133304/100‑1                                                                                                                                                                                                             TTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2808238‑2808135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA  >  NC_000913/2808165‑2808263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.