| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171625 | 0 (0.000) | 53 (0.610) | 13/166 | NT | 100% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
AACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC > NC_000913/4171526‑4171724 | aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:508213‑M1/100‑1 (MQ=255)aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 2:39407‑M1/100‑1 (MQ=255)aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT < 1:251057‑M1/100‑1 (MQ=255) cGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaa > 1:2431434‑M1/1‑78 (MQ=255) gTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACTGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggccgaaaatctgctctc > 2:1046540‑M1/1‑67 (MQ=255) gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaa > 1:149069‑M1/1‑40 (MQ=255) cttccgatctttaaatcagaacGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagg < 1:52969‑M1/90‑63 (MQ=255) cTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaagg > 2:1325458‑M1/1‑38 (MQ=255) aCAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaag < 2:149068‑M1/100‑68 (MQ=255) nagATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcc > 2:167138‑M1/2‑32 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagc > 1:1006302‑M1/1‑32 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct > 2:1270856‑M1/1‑31 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct > 2:43434‑M1/1‑31 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc > 1:350866‑M1/1‑31 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcct > 1:2002243‑M1/1‑30 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct > 2:94986‑M1/1‑30 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct > 2:27603‑M1/1‑30 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca > 1:2587494‑M1/1‑29 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctc > 2:2475648‑M1/1‑29 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcac > 1:1855889‑M1/1‑28 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctca > 1:126136‑M1/1‑28 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctca > 1:967892‑M1/1‑28 (MQ=255) ttAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggagatcggaag > 2:52969‑M1/1‑28 (MQ=255) ttAAATCAGAACGCAGAAGCAGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcac > 2:1590582‑M1/1‑28 (MQ=255) tAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacg > 1:1091965‑M1/1‑27 (MQ=255) naaatCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcac > 2:2075219‑M1/2‑27 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg > 2:2072060‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 1:1786369‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 2:2035874‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 2:1142935‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 1:1141353‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg > 1:1449987‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg > 1:1989721‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg > 1:50584‑M1/1‑26 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg > 1:1420216‑M1/1‑26 (MQ=255) aaTCAGACCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt > 1:1365826‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggt > 1:635570‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt > 1:1047192‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt > 2:201939‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 2:2602272‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcactccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 2:1832208‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 2:2271442‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 1:76461‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg > 1:426208‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg > 1:1090517‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg > 1:2058337‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg > 2:852072‑M1/1‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg > 1:791275‑M1/1‑25 (MQ=255) ntcAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt > 2:308458‑M1/2‑24 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttttctaaatccgccaaaacacgttcgacgttgtaaggttaagcctcacggt > 2:73041‑M1/1‑24 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt > 1:1906048‑M1/1‑24 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt > 2:372998‑M1/1‑24 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt > 1:2231858‑M1/1‑24 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggt > 2:940021‑M1/1‑24 (MQ=255) tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggtt > 1:740702‑M1/1‑23 (MQ=255) aGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttca < 1:940026‑M1/100‑80 (MQ=255) tCTGATttaatctgtatcaggctgaacatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc > 1:1585038‑M1/1‑6 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 1:1480935‑M1/100‑95 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 1:1117546‑M1/100‑95 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 2:87787‑M1/100‑95 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 1:1691904‑M1/100‑95 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 2:219844‑M1/100‑95 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 1:838744‑M1/100‑95 (MQ=255) cTGATttaatctgtatcaggccgaaaatcgtctcccaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttaattagtaccggttagc < 2:213297‑M1/99‑95 (MQ=255) tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc < 1:1173446‑M1/100‑97 (MQ=255) tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc > 2:625343‑M1/1‑4 (MQ=255) tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc > 2:1220491‑M1/1‑4 (MQ=255) gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaatcaccgtcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca < 2:637025‑M1/100‑98 (MQ=255) gATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca > 2:490682‑M1/1‑3 (MQ=255) aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac > 1:2523468‑M1/1‑2 (MQ=255) aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa > 1:440049‑M1/1‑2 (MQ=255) aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaa < 2:901111‑M1/100‑99 (MQ=255) aTttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct < 2:1376222‑M1/97‑96 (MQ=255) tttaatctgtatcaggctgaaaatcttctctcaatccgccaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaacg < 2:2523455‑M1/100‑100 (MQ=255) tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac > 2:1674959‑M1/1‑1 (MQ=255) | AACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC > NC_000913/4171526‑4171724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |