New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3250977 =	69 (0.920)	8 (0.120)	8/174	8.7	11.8%	intergenic (+23/‑47)	yqjF/yqjG	putative quinol oxidase subunit/putative S‑transferase
	?	NC_000913	3251005 =	59 (0.900)					intergenic (+51/‑19)	yqjF/yqjG	putative quinol oxidase subunit/putative S‑transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATC  >  NC_000913/3250881‑3251076                                                                                                 |                                                                                                    gCGGATTCCTGCTGCTGGCAATTACCGTTCCGGGCGCTTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATaaaaa                                                                                                  <  2:32450/100‑1 (MQ=255)    gATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACg                                                                                               <  2:430514/100‑1 (MQ=255)      ttCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCTCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgag                                                                                             >  1:1006853/1‑100 (MQ=255)      ttCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgag                                                                                             <  1:814317/100‑1 (MQ=255)       tCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgagg                                                                                            >  1:1214677/1‑100 (MQ=255)         ctgctgctgGCAATTACCGGTCCGGGTGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACgaggag                                                                                          >  1:501298/1‑100 (MQ=255)           gctgctgGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAggagga                                                                                        >  1:511213/1‑100 (MQ=255)               ctgGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGct                                                                                    <  2:1293239/100‑1 (MQ=255)                tgGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGctc                                                                                   >  1:869978/1‑100 (MQ=255)                 ggCAATTACCGGTCCCGGCGCTTAAAGCTGAGCGCGGCATCTGAGTGCAAAGGTGTAACCACGCTCTATACTCTCCGATAAAACACGAGGAGGCTGctc                                                                                   >  1:1733122/1‑99 (MQ=255)                   cAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGctcctc                                                                                <  2:511975/100‑1 (MQ=255)                   cAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGatcc                                                                                  >  2:703077/1‑98 (MQ=255)                    aaTTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCg                                                                               >  1:641348/1‑100 (MQ=255)                        aCCGGTCCTGGCTCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGtttt                                                                           <  2:1440837/100‑1 (MQ=255)                         ccGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGttttt                                                                          <  2:246626/100‑1 (MQ=255)                         ccGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGttttt                                                                          <  2:1733537/100‑1 (MQ=255)                           ggTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGc                                                                        >  1:823170/1‑100 (MQ=255)                           ggTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGc                                                                        >  1:46009/1‑100 (MQ=255)                             tCCGGTCGCGTATAGCATCGACCGCCTGCTGAATAAAAACTGCTAAGCACGCGCTATACTTAACGATAAAAAACGAGTATGAAGCTCCTCGTTTTTGCTa                                                                      <  1:267213/100‑1 (MQ=255)                               cGGGCGCGTATAGCTTTGACCGCCTGCTGAATAAAAAGTGGTAAGCACGTGCTATACTTAACGATAAAAATCGAGGAGGAATGTCCTCGTTTTTGc                                                                        <  1:155612/96‑1 (MQ=255)                               cGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTAt                                                                     <  2:90150/99‑1 (MQ=255)                                gggCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTg                                                                   <  2:1404468/100‑1 (MQ=255)                                 ggCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTgg                                                                  >  2:1614602/1‑100 (MQ=255)                                  gcgcGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTgga                                                                 <  1:1292044/100‑1 (MQ=255)                                   cgcgTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTggag                                                                <  2:1214688/100‑1 (MQ=255)                                   cgcgTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTggag                                                                >  2:1440909/1‑100 (MQ=255)                                    gggTATAGCATCGACCGCCTGCTGAATAAAAAGTGGGAAGCACGCGCTATACTTAACGATAAAAAACGAGGATGACGCTCCTCGTTTTTGCTATTggagg                                                               <  1:1635375/98‑1 (MQ=255)                                     cgTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTggagga                                                              <  1:1788294/100‑1 (MQ=255)                                        ataGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTAGAGgaga                                                            >  2:438751/1‑99 (MQ=255)                                        ataGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTAGAGgaga                                                            >  2:438558/1‑99 (MQ=255)                                           gCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCAAGCGCTATACTTAACGATAAAAAACGAGGAGGACGATCCTAGTTTTTGCTATTGGAGgagaga                                                          >  1:1680059/1‑98 (MQ=255)                                           gCATCGACCGCCTGATGAATAAAAAGAGGAAAGCAAGCGCTATACTTAACGATAAAAAAAGAGGGGGAAGCTCCTCGTTTTAGCTATTGGAGGAGAGaaa                                                        >  1:443358/1‑100 (MQ=255)                                             aTCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGaaaaa                                                      >  2:306733/1‑100 (MQ=255)                                               cGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGATGAGGAAGCTCCTCGTTTTTGCTATTGAAGGAGAGAAAAATg                                                    <  1:30707/100‑1 (MQ=255)                                               cGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATg                                                    <  2:1189124/100‑1 (MQ=255)                                                gACCNCCNGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATgg                                                   >  1:241443/1‑100 (MQ=255)                                                gACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTAGTTTTTGCTATTGGAGGAGAGAAAAATgg                                                   >  1:1760937/1‑100 (MQ=255)                                                 aCCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATggg                                                  <  2:452800/100‑1 (MQ=255)                                                  ccGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGt                                                 <  1:1102085/100‑1 (MQ=255)                                                    gCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCa                                               >  1:836110/1‑100 (MQ=255)                                                    gCCTGCTGAATAAAAAGTGGAAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCa                                               >  1:1029727/1‑100 (MQ=255)                                                      ctgctgAATAAAAAGTGGTAAGCACGCGGTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAAc                                             <  1:1286249/100‑1 (MQ=255)                                                      ctgctgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTAGTCTTTACTATTGGAGGAGAGAAAAATGGGTCAAc                                             >  1:493550/1‑100 (MQ=255)                                                        gctgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTg                                           >  2:949464/1‑100 (MQ=255)                                                          tgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGAt                                         >  1:408471/1‑100 (MQ=255)                                                          tgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGAt                                         <  1:215532/100‑1 (MQ=255)                                                             aTAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGa                                      >  1:836339/1‑100 (MQ=255)                                                             aTAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGa                                      >  1:1641483/1‑100 (MQ=255)                                                                  aaGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCg                                 >  1:1522006/1‑100 (MQ=255)                                                                      ggTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTg                             >  1:1257278/1‑100 (MQ=255)                                                                       gTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTgg                            <  2:1031399/100‑1 (MQ=255)                                                                       gTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTgg                            >  2:1179303/1‑100 (MQ=255)                                                                        tAAGCATGTGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGc                           <  2:888168/100‑1 (MQ=255)                                                                        tAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGc                           <  2:51762/100‑1 (MQ=255)                                                                        tAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGc                           <  1:1436584/100‑1 (MQ=255)                                                                        tAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTAAAAAAAAAAAAAAAAATGGGTCAACTGATTGACGGCGTCTGGc                           <  1:1650380/100‑1 (MQ=255)                                                                         aaGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCa                          >  1:585358/1‑100 (MQ=255)                                                                         aaGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCa                          <  2:641352/100‑1 (MQ=255)                                                                          aGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCAt                         >  2:946235/1‑100 (MQ=255)                                                                           gCACGCGCTATACTTAACGATAAAAAACGATGTGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                        <  2:497026/100‑1 (MQ=255)                                                                           gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                        <  1:306731/100‑1 (MQ=255)                                                                           gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                        <  1:1500788/100‑1 (MQ=255)                                                                           gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                        <  1:1171647/100‑1 (MQ=255)                                                                           gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                        <  2:1522017/100‑1 (MQ=255)                                                                              cgcgCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGaca                     >  2:131695/1‑100 (MQ=255)                                                                                  cTATACTTAACGATAAAAAACGATGAGGAAGCTCCTCGTTTTTGTTATTAAAAGAAAAAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTg                 <  1:1659074/100‑1 (MQ=255)                                                                                       cTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACg            >  1:1528837/1‑100 (MQ=255)                                                                                         tAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGAt          >  2:416007/1‑100 (MQ=255)                                                                                            cGATAAAAAACGAGGAGGAATCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATAcc       <  2:823175/100‑1 (MQ=255)                                                                                                 aaaaaCGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGCAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATc  >  1:1120383/1‑100 (MQ=255)                                                                                                 |                                                                                                    GCGGATTCCTGCTGCTGGCAATTACCGGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATC  >  NC_000913/3250881‑3251076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.