New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3250977 =	69 (0.920)	8 (0.120)	8/174	8.7	11.8%	intergenic (+23/‑47)	yqjF/yqjG	putative quinol oxidase subunit/putative S‑transferase
	?	NC_000913	3251005 =	59 (0.900)					intergenic (+51/‑19)	yqjF/yqjG	putative quinol oxidase subunit/putative S‑transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGT  >  NC_000913/3250907‑3251098                                                                                                   |                                                                                              ggTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGc                                                                                              >  1:823170/1‑100 (MQ=255) ggTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGc                                                                                              >  1:46009/1‑100 (MQ=255)   tCCGGTCGCGTATAGCATCGACCGCCTGCTGAATAAAAACTGCTAAGCACGCGCTATACTTAACGATAAAAAACGAGTATGAAGCTCCTCGTTTTTGCTa                                                                                            <  1:267213/100‑1 (MQ=255)     cGGGCGCGTATAGCTTTGACCGCCTGCTGAATAAAAAGTGGTAAGCACGTGCTATACTTAACGATAAAAATCGAGGAGGAATGTCCTCGTTTTTGc                                                                                              <  1:155612/96‑1 (MQ=255)     cGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTAt                                                                                           <  2:90150/99‑1 (MQ=255)      gggCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTg                                                                                         <  2:1404468/100‑1 (MQ=255)       ggCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTgg                                                                                        >  2:1614602/1‑100 (MQ=255)        gcgcGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTgga                                                                                       <  1:1292044/100‑1 (MQ=255)         cgcgTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTggag                                                                                      <  2:1214688/100‑1 (MQ=255)         cgcgTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTggag                                                                                      >  2:1440909/1‑100 (MQ=255)          gggTATAGCATCGACCGCCTGCTGAATAAAAAGTGGGAAGCACGCGCTATACTTAACGATAAAAAACGAGGATGACGCTCCTCGTTTTTGCTATTggagg                                                                                     <  1:1635375/98‑1 (MQ=255)           cgTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTggagga                                                                                    <  1:1788294/100‑1 (MQ=255)              ataGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTAGAGgaga                                                                                  >  2:438751/1‑99 (MQ=255)              ataGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTAGAGgaga                                                                                  >  2:438558/1‑99 (MQ=255)                 gCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCAAGCGCTATACTTAACGATAAAAAACGAGGAGGACGATCCTAGTTTTTGCTATTGGAGgagaga                                                                                >  1:1680059/1‑98 (MQ=255)                 gCATCGACCGCCTGATGAATAAAAAGAGGAAAGCAAGCGCTATACTTAACGATAAAAAAAGAGGGGGAAGCTCCTCGTTTTAGCTATTGGAGGAGAGaaa                                                                              >  1:443358/1‑100 (MQ=255)                   aTCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGaaaaa                                                                            >  2:306733/1‑100 (MQ=255)                     cGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGATGAGGAAGCTCCTCGTTTTTGCTATTGAAGGAGAGAAAAATg                                                                          <  1:30707/100‑1 (MQ=255)                     cGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATg                                                                          <  2:1189124/100‑1 (MQ=255)                      gACCNCCNGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATgg                                                                         >  1:241443/1‑100 (MQ=255)                      gACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTAGTTTTTGCTATTGGAGGAGAGAAAAATgg                                                                         >  1:1760937/1‑100 (MQ=255)                       aCCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATggg                                                                        <  2:452800/100‑1 (MQ=255)                        ccGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGt                                                                       <  1:1102085/100‑1 (MQ=255)                          gCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCa                                                                     >  1:836110/1‑100 (MQ=255)                          gCCTGCTGAATAAAAAGTGGAAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCa                                                                     >  1:1029727/1‑100 (MQ=255)                            ctgctgAATAAAAAGTGGTAAGCACGCGGTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAAc                                                                   <  1:1286249/100‑1 (MQ=255)                            ctgctgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTAGTCTTTACTATTGGAGGAGAGAAAAATGGGTCAAc                                                                   >  1:493550/1‑100 (MQ=255)                              gctgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTg                                                                 >  2:949464/1‑100 (MQ=255)                                tgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGAt                                                               >  1:408471/1‑100 (MQ=255)                                tgAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGAt                                                               <  1:215532/100‑1 (MQ=255)                                   aTAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGa                                                            >  1:836339/1‑100 (MQ=255)                                   aTAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGa                                                            >  1:1641483/1‑100 (MQ=255)                                        aaGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCg                                                       >  1:1522006/1‑100 (MQ=255)                                            ggTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTg                                                   >  1:1257278/1‑100 (MQ=255)                                             gTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTgg                                                  <  2:1031399/100‑1 (MQ=255)                                             gTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTgg                                                  >  2:1179303/1‑100 (MQ=255)                                              tAAGCATGTGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGc                                                 <  2:888168/100‑1 (MQ=255)                                              tAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGc                                                 <  1:1436584/100‑1 (MQ=255)                                              tAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGc                                                 <  2:51762/100‑1 (MQ=255)                                              tAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTAAAAAAAAAAAAAAAAATGGGTCAACTGATTGACGGCGTCTGGc                                                 <  1:1650380/100‑1 (MQ=255)                                               aaGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCa                                                <  2:641352/100‑1 (MQ=255)                                               aaGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCa                                                >  1:585358/1‑100 (MQ=255)                                                aGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCAt                                               >  2:946235/1‑100 (MQ=255)                                                 gCACGCGCTATACTTAACGATAAAAAACGATGTGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                                              <  2:497026/100‑1 (MQ=255)                                                 gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                                              <  2:1522017/100‑1 (MQ=255)                                                 gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                                              <  1:1171647/100‑1 (MQ=255)                                                 gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                                              <  1:306731/100‑1 (MQ=255)                                                 gCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATg                                              <  1:1500788/100‑1 (MQ=255)                                                    cgcgCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGaca                                           >  2:131695/1‑100 (MQ=255)                                                        cTATACTTAACGATAAAAAACGATGAGGAAGCTCCTCGTTTTTGTTATTAAAAGAAAAAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTg                                       <  1:1659074/100‑1 (MQ=255)                                                             cTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACg                                  >  1:1528837/1‑100 (MQ=255)                                                               tAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGAt                                >  2:416007/1‑100 (MQ=255)                                                                  cGATAAAAAACGAGGAGGAATCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATAcc                             <  2:823175/100‑1 (MQ=255)                                                                       aaaaaCGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGCAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATc                        >  1:1120383/1‑100 (MQ=255)                                                                            cGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACcg                   >  2:969501/1‑100 (MQ=255)                                                                             gaggagGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACcgg                  >  2:1111241/1‑100 (MQ=255)                                                                              aggaggAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACcggc                 <  2:836344/100‑1 (MQ=255)                                                                                gaggaAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACcggcgg               >  2:253375/1‑100 (MQ=255)                                                                                  ggaAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTa             <  1:156499/100‑1 (MQ=255)                                                                                    aatctcttcGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCANATCTACCGGCGGTa             <  2:241444/95‑1 (MQ=255)                                                                                          ctcGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCaa     >  1:698312/1‑100 (MQ=255)                                                                                            cGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACg   <  1:1440898/100‑1 (MQ=255)                                                                                             gTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGt  >  1:1232942/1‑100 (MQ=255)                                                                                                   |                                                                                              GGTCCGGGCGCGTATAGCATCGACCGCCTGCTGAATAAAAAGTGGTAAGCACGCGCTATACTTAACGATAAAAAACGAGGAGGAAGCTCCTCGTTTTTGCTATTGGAGGAGAGAAAAATGGGTCAACTGATTGACGGCGTCTGGCATGACACCTGGTACGATACCAAATCTACCGGCGGTAAATTTCAACGT  >  NC_000913/3250907‑3251098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.