| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3139655 = | NA (NA) | 9 (0.120) | 5/164 | NT | NA | noncoding (35/83 nt) | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4218440 = | NA (NA) | noncoding (5/132 nt) | REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
CACTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3139753‑3139655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATA > NC_000913/4218440‑4218545 CACTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTG > 2:1857069/1‑100CACTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTG < 1:379328/100‑1 ACTGCGTCAAATGGATTACGACAGTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTG < 1:846031/99‑1 ACTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGC > 1:1074591/1‑100 CTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCC < 2:1548898/100‑1 CTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTACACGATTGCC < 1:874174/100‑1 TGCTCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCG < 2:166739/100‑1 CGCCAAATGGATTACGACATTACCAGCGCTTGATTATTATCTTTCGTATGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGA < 2:1868265/100‑1 ggCAAATGGATTACGACATTACCAGCGCGTGATTATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCG < 2:2180305/95‑1 GCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTTGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGAT > 2:901224/1‑100 GCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGAT > 1:1377564/1‑100 ACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACG > 2:438564/1‑100 AGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:640653/100‑1 GCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCA < 1:1382910/100‑1 GCGCGTGATGATTAGCTTTCGGAGGCCTGATAGGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGC < 2:1674659/99‑1 GCGTGATGATTAGCTTTCGTAGGCCTGATAAGTCGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAT < 2:139361/100‑1 GCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAT < 1:438563/100‑1 GCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAT < 2:616208/100‑1 CGTGTTGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:603850/96‑1 CGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATAAGGCGTTCACGCCGCATCCGGCAATC < 1:2231706/100‑1 GCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTATGC > 2:322492/1‑100 CCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCT > 1:2011952/1‑100 CGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTG < 1:1050459/100‑1 GATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGAGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCTGAACGAAGGCTGGA < 2:997884/100‑1 TAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATA < 1:2057157/100‑1 CACTGCGCCAAATGGATTACGACATTACCAGCGCGTGATGATTAGCTTTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATTGTGCACGATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3139753‑3139655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATA > NC_000913/4218440‑4218545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |