| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4627444 | 96 (1.180) | 3 (0.040) | 3/162 | NT | 3.3% | coding (130/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | = 4627477 | 90 (1.210) | coding (163/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ACTGCCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4627339‑4627444‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccccaAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATCA < NC_000913/4627477‑4627380 ACTGCCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAA < 2:197839/100‑1 CTGCCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAG > 2:799884/1‑100 TGCCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGC > 1:2155148/1‑100 GCCATTAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCC < 1:1783714/100‑1 GCCATCAAGCAACAGGGCTGTACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCC < 1:1567738/100‑1 GCCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCC > 2:1306179/1‑100 CCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCC > 1:1213831/1‑100 CATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCC > 1:611463/1‑100 CATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCC > 2:367482/1‑100 CATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCC > 2:1200715/1‑100 GGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGA < 1:1157102/100‑1 TATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATT < 1:2001633/100‑1 CAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCA < 1:1412140/100‑1 AAGCCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTG < 1:1165729/100‑1 AAGCCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTG < 1:2226959/100‑1 AGCCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGG < 2:782570/100‑1 CCCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCA > 2:287645/1‑100 CCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCAT < 1:2178278/100‑1 CCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCAT > 1:94442/1‑100 CCCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCA > 1:798922/1‑99 CCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATC > 1:1480023/1‑100 CCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATC > 2:1827474/1‑100 CCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATC > 2:222802/1‑100 CCAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATC > 2:726170/1‑100 CAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATCA < 1:1662026/100‑1 CAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATCA < 1:816081/100‑1 CAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATCA > 1:221682/1‑100 CAAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCCGGCATCA < 1:1175385/100‑1 AAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCA < 2:1952623/96‑1 ACTGCCATCAAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4627339‑4627444‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccccaAAAAACGGTGCAACGCCTCCAGCTTTTGCGCGCTGGGGCTTTTGATTTTGGCATTCAGTAACTGGCTTAAATACCCTTTGGTCATACCGCTGGCATCA < NC_000913/4627477‑4627380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |