New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 462744496 (1.180)3 (0.040) 3/162 NT 3.3% coding (130/1233 nt) nadR trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
?NC_000913 = 4627477 90 (1.210)coding (163/1233 nt) nadR trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor
Rejected: Frequency below cutoff threshold.

Only 100 of 144 total aligned reads displayed.

AAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTG  >  NC_000913/4627348‑4627542
                                                                                                |                                                                                                  
aaGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAgcg                                                                                                 >  2:912917/1‑100 (MQ=255)
 aGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAgcgc                                                                                                >  1:1021545/1‑100 (MQ=255)
   cAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAgcgcgc                                                                                              <  2:110935/100‑1 (MQ=255)
   cAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAgcgcg                                                                                               >  2:1143481/1‑99 (MQ=255)
     aCAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCaa                                                                                            >  2:1757352/1‑100 (MQ=255)
      cAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCaaa                                                                                           >  1:1827486/1‑100 (MQ=255)
      cAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCaaa                                                                                           >  1:1411518/1‑100 (MQ=255)
      cAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCaaa                                                                                           >  2:1662896/1‑100 (MQ=255)
        gggCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAg                                                                                         >  2:512578/1‑100 (MQ=255)
          gCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCt                                                                                       >  1:725064/1‑100 (MQ=255)
               aCGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAgg                                                                                  <  2:121698/100‑1 (MQ=255)
                cGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGc                                                                                 >  2:1716913/1‑100 (MQ=255)
                cGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGc                                                                                 >  1:954120/1‑100 (MQ=255)
                  cTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAg                                                                                   >  2:1803764/1‑96 (MQ=255)
                  cTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGt                                                                               <  1:918968/100‑1 (MQ=255)
                   tACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGtt                                                                              <  2:1569118/100‑1 (MQ=255)
                   tACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGtt                                                                              <  1:252787/100‑1 (MQ=255)
                    aCAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTg                                                                             <  2:724049/100‑1 (MQ=255)
                     nagcagGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGc                                                                            >  2:498688/2‑100 (MQ=255)
                     cagcagGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGc                                                                            >  1:135937/1‑100 (MQ=255)
                     cagcagGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGc                                                                            <  1:684752/100‑1 (MQ=255)
                       gcagGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCAc                                                                          <  2:968478/100‑1 (MQ=255)
                       gcagGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCAc                                                                          >  1:2123841/1‑100 (MQ=255)
                       gcagGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCAc                                                                          >  1:1030151/1‑100 (MQ=255)
                          ggTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGt                                                                       >  1:394350/1‑100 (MQ=255)
                            tAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGttt                                                                     >  2:2087161/1‑100 (MQ=255)
                              gCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGttttt                                                                   >  1:1023854/1‑100 (MQ=255)
                              gCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGttttt                                                                   >  1:1385856/1‑100 (MQ=255)
                                tGATGCCGGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtg                                                                 <  1:1175385‑M2/100‑3 (MQ=255)
                                tGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtg                                                                 <  1:816081‑M2/100‑3 (MQ=255)
                                tGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtg                                                                 <  1:1662026‑M2/100‑3 (MQ=255)
                                tGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtg                                                                 >  1:221682‑M2/1‑98 (MQ=255)
                                 gATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtgg                                                                >  2:222802‑M2/1‑97 (MQ=255)
                                  aTGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtggg                                                               >  1:94442‑M2/1‑96 (MQ=255)
                                   tggcAGAGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCTCAGCGCGCAAAAGCTGGAGGCGTTGCACCGtttttgg                                                                 <  2:1825660/94‑3 (MQ=255)
                                   tGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtgggg                                                              >  2:287645‑M2/1‑95 (MQ=255)
                                   tGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtggg                                                               >  1:798922‑M2/1‑95 (MQ=255)
                                   tGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTt                                                                  <  2:1952623‑M2/96‑2 (MQ=255)
                                      cAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtggggctt                                                           <  1:2226959‑M2/100‑9 (MQ=255)
                                          ggTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGt                                                       <  2:1023852/100‑1 (MQ=255)
                                            tATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgatt                                                     <  1:2001633‑M1/100‑48 (MQ=255)
                                            tATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGttt                                                     >  1:1303363/1‑100 (MQ=255)
                                              tGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAAGCGTTGCACCGTTTTTTGGGGCTTGAGTTTcc                                                   >  1:1763460/1‑100 (MQ=255)
                                               gACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGTCGTTGCACCGTTTTTTGGGGCTTGAGTTTccc                                                  >  2:1923221/1‑100 (MQ=255)
                                                aCCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTcccc                                                 <  1:2231056/100‑1 (MQ=255)
                                                aCCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTcccc                                                 <  1:1066516/100‑1 (MQ=255)
                                                 ccAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCg                                                >  2:1459468/1‑100 (MQ=255)
                                                 ccAAAGGGTATTTAAGCCAGTTACAGAATGCCAAAATCAAAAGCACCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTAGAGTTCCCCCg                                                >  2:470601/1‑100 (MQ=255)
                                                   aaaGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGc                                              <  2:17233/100‑1 (MQ=255)
                                                    aaGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCa                                             <  1:1738947/100‑1 (MQ=255)
                                                     aGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTTGAGGCGTTGCACCGTTTTTGGGGGCTTGAGTTTCCCCGGCag                                            <  1:211914/100‑1 (MQ=255)
                                                        gTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCagaag                                         <  2:882361/100‑1 (MQ=255)
                                                        gTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCagaag                                         >  1:1181305/1‑100 (MQ=255)
                                                            ttAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTTAGTTTCCCCGGCAGAAGaaaa                                     <  2:1040713/100‑1 (MQ=255)
                                                            ttAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGaaaa                                     >  1:455538/1‑100 (MQ=255)
                                                              aaGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACg                                   <  1:1487286/100‑1 (MQ=255)
                                                                  cAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCg                               <  2:2226944/100‑1 (MQ=255)
                                                                  cAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCg                               >  2:1863651/1‑100 (MQ=255)
                                                                    gTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGgt                             <  1:1119454/100‑1 (MQ=255)
                                                                    gTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGgt                             <  1:1662907/100‑1 (MQ=255)
                                                                       aCTGAATTCCAATATCAAAATCTGCAGCGCGCAAAAGCTGGAGGCATTGCACAGTTTTTTGGGGATTGAGTTTCACAGGCAGAAGAAAACGATCGgtgt                           >  2:780244/1‑99 (MQ=255)
                                                                        cTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCg                         <  1:1297692/100‑1 (MQ=255)
                                                                        cTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCg                         <  1:865469/100‑1 (MQ=255)
                                                                          gAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTa                       >  1:1424886/1‑100 (MQ=255)
                                                                          gAATGCCAAAATCAAAAACCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTATTTTGGGCTTGACTATACACGACAAAAAAAAACGAtacgatacgt                        >  2:1529666/1‑90 (MQ=255)
                                                                             tGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtggggcttttgattttggcattcagtaactggcttaaataccctttg                    <  1:1412140‑M2/100‑48 (MQ=255)
                                                                             tGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTc                    <  2:973023/100‑1 (MQ=255)
                                                                               ccAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCgg                  >  1:1848526/1‑100 (MQ=255)
                                                                                cAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGt                 <  1:2154895/100‑1 (MQ=255)
                                                                                cAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGt                 >  1:926767/1‑100 (MQ=255)
                                                                                cAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGt                 >  1:1573707/1‑100 (MQ=255)
                                                                                   aaTCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtggggcttttgattttggcattcagtaactggcttaaataccctttggtcata              <  1:2001633‑M2/100‑54 (MQ=255)
                                                                                   aaTCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAg              <  2:1223708/100‑1 (MQ=255)
                                                                                   aaTCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAg              <  1:939251/100‑1 (MQ=255)
                                                                                    aTCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGt             >  2:467325/1‑100 (MQ=255)
                                                                                    aTCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGt             <  2:1980649/100‑1 (MQ=255)
                                                                                     tCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTtggggcttttgattttggcattcagtaactggcttaaataccctttggtcatacc            <  1:1157102‑M2/100‑56 (MQ=255)
                                                                                     tCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGtt            <  2:1498155/100‑1 (MQ=255)
                                                                                      cAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGtt            >  1:1752702/1‑99 (MQ=255)
                                                                                       aaaaGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCt          >  2:754142/1‑100 (MQ=255)
                                                                                        aaaGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTa         <  1:1405953/100‑1 (MQ=255)
                                                                                         aaGCCCCAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctg        <  1:2226959‑M1/100‑93 (MQ=255)
                                                                                         aaGCCCCAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctg        <  1:1165729‑M1/100‑93 (MQ=255)
                                                                                          aGCCCCAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctgg       <  2:782570‑M1/100‑94 (MQ=255)
                                                                                          aGCCCCAGCGCGCAAAAGCTGCAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTAcc       <  2:1838373/100‑1 (MQ=255)
                                                                                           gCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGTGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTAccc      >  2:818048/1‑100 (MQ=255)
                                                                                            ccccAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggca     >  2:287645‑M1/1‑5 (MQ=255)
                                                                                            ccccAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTTGGGCTTGAGTTTCCACGTCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCa     >  2:2187988/1‑100 (MQ=255)
                                                                                            ccccAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTAccc      <  1:2159348/99‑1 (MQ=255)
                                                                                             cccAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggcat    <  1:2178278‑M1/100‑97 (MQ=255)
                                                                                             cccAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggca     >  1:798922‑M1/1‑4 (MQ=255)
                                                                                             cccAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCAc    >  1:364636/1‑100 (MQ=255)
                                                                                              ccAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggcatc   >  2:726170‑M1/1‑3 (MQ=255)
                                                                                              ccAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggcatc   >  2:1827474‑M1/1‑3 (MQ=255)
                                                                                              ccAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggcatc   >  1:1480023‑M1/1‑3 (MQ=255)
                                                                                              ccAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGTGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACt   >  2:1004812/1‑100 (MQ=255)
                                                                                               cAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggcatca  >  1:221682‑M1/1‑2 (MQ=255)
                                                                                               cAaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgccggcatca  <  1:1175385‑M1/100‑99 (MQ=255)
                                                                                               cAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTg  <  2:853001/100‑1 (MQ=255)
                                                                                                aaaaaacggtgcaacgcctccagcttttgcgcgctggggcttttgattttggcattcagtaactggcttaaataccctttggtcataccgctggca     <  2:1952623‑M1/96‑96 (MQ=255)
                                                                                                |                                                                                                  
AAGCAACAGGGCTGCACGCTACAGCAGGTAGCTGATGCCAGCGGTATGACCAAAGGGTATTTAAGCCAGTTACTGAATGCCAAAATCAAAAGCCCCAGCGCGCAAAAGCTGGAGGCGTTGCACCGTTTTTTGGGGCTTGAGTTTCCCCGGCAGAAGAAAACGATCGGTGTCGTATTCGGTAAGTTCTACCCACTG  >  NC_000913/4627348‑4627542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.