New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 25765	NA (NA)	3 (0.040)	3/164	NT	NA	noncoding (56/86 nt)	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 2835148	NA (NA)					noncoding (82/82 nt)	REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences

AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/25667‑25765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACCTA  <  NC_000913/2835148‑2835043                                                                                                                                                                                                               AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGG                                                                                                           >  2:357776/1‑100  AGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGC                                                                                                          <  1:1013568/100‑1   GGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCC                                                                                                         >  1:1258731/1‑100   GGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCC                                                                                                         >  2:1400058/1‑100    GTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCG                                                                                                        <  1:978058/100‑1                           AAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATGCGGCGTAAACGCCTTATCC                                                                                 <  1:1551012/100‑1                             ACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGG                                                                               <  1:963502/100‑1                                  AATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC                                                                          <  1:394512/100‑1                                                                                               ccatttgCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCA                <  2:183150/90‑1                                                                                                   GGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGC         >  2:466625/1‑100                                                                                                    GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCC        >  1:1810268/1‑100                                                                                                    GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCC        <  1:1819957/100‑1                                                                                                      CGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCA      >  1:1606087/1‑100                                                                                                       GGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCAC     <  1:337778/100‑1                                                                                                        GATGTGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACC    <  1:1233710/100‑1                                                                                                         ATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACCT   >  2:1330323/1‑100                                                                                                         ATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACCT   <  1:1347976/100‑1                                                                                                         ATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACCT   <  1:1344864/100‑1                                                                                                          TGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGACAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACCTA  <  2:2034933/100‑1                                                                                                                                                                                                               AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/25667‑25765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACACATGCGTCCCCGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATTTTAGGCACAGTAGCCCACCTA  <  NC_000913/2835148‑2835043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.