New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 25765NA (NA)3 (0.040) 3/164 NT NA noncoding (56/86 nt) REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2835148 NA (NA)noncoding (82/82 nt) REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 105 total aligned reads displayed.

AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGCCGTCCTGGTG  >  NC_000913/25667‑25864
                                                                                                  |                                                                                                   
aaGGTTTTTTGCCTTTTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAg                                                                                                     >  2:1881782/1‑99 (MQ=255)
aaGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGg                                                                                                    >  2:357776‑M1/1‑99 (MQ=255)
 aGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgc                                                                                                   <  1:1013568‑M1/100‑3 (MQ=255)
  ggTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgcc                                                                                                  >  1:1258731‑M1/1‑97 (MQ=255)
  ggTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgcc                                                                                                  >  2:1400058‑M1/1‑97 (MQ=255)
   gTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgccg                                                                                                 <  1:978058‑M1/100‑5 (MQ=255)
       tttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACATATTGCTGCGAAATCGTAGGCCGGATa                                                                                             <  1:1362240/100‑1 (MQ=255)
         tGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAg                                                                                           >  1:1019669/1‑100 (MQ=255)
             ttCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt                                                                                       >  1:272403/1‑100 (MQ=255)
             ttCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt                                                                                       <  1:2241346/100‑1 (MQ=255)
               cTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGttt                                                                                     <  2:713914/100‑1 (MQ=255)
                tAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGCAGGCCGGATAAGGCGTTTa                                                                                    >  2:420506/1‑100 (MQ=255)
                 agagCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAc                                                                                   >  1:996520/1‑100 (MQ=255)
                  gagCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcg                                                                                  >  1:1588864/1‑100 (MQ=255)
                    gCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                                                >  2:118096/1‑100 (MQ=255)
                    gCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                                                >  2:827250/1‑100 (MQ=255)
                      gAAACACCAATAATAAACCCTGCAGGATGCCATGCTGACGAATCTTATTCGTCCTACAGATTGCTGCGAAATCGTAGGGCAGCTAAAGCATTTAcg                                                                                  >  2:352734/1‑96 (MQ=255)
                      gAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              >  2:1817801/1‑100 (MQ=255)
                       ctaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                             <  2:1740968/98‑1 (MQ=255)
                       aaaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  1:920462/97‑1 (MQ=255)
                       aaaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                             >  2:2043358/1‑100 (MQ=255)
                         aaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCaag                                                                           >  1:1740979/1‑98 (MQ=255)
                         aaaaCAATAATAAACCCTGCCGGATGCAATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                           >  2:701372/1‑100 (MQ=255)
                          aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgccggatgcggcgtaaacgccttatcc                                                                          <  1:1551012‑M1/100‑28 (MQ=255)
                          aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                                          <  2:656613/100‑1 (MQ=255)
                           aaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGCAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                                         <  1:420505/100‑1 (MQ=255)
                            aCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgccggatgcggcgtaaacgccttatccgg                                                                        <  1:963502‑M1/100‑30 (MQ=255)
                            aCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                        >  1:1830759/1‑100 (MQ=255)
                             cAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  2:1739132/100‑1 (MQ=255)
                             cAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       >  2:2014090/1‑100 (MQ=255)
                             cAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       >  1:98694/1‑100 (MQ=255)
                              aataatAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      <  1:1915352/100‑1 (MQ=255)
                              aataatAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      >  2:2015231/1‑100 (MQ=255)
                                 aataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGgccggatgcggcgtaaacgccttatccggcctac                                                                   <  1:394512‑M1/100‑35 (MQ=255)
                                 aataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaa                                                                   >  1:302849/1‑100 (MQ=255)
                                 aataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaa                                                                   >  1:1406964/1‑100 (MQ=255)
                                  ataaTCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaa                                                                   >  1:558184/1‑99 (MQ=255)
                                  ataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaaa                                                                  >  1:1177832/1‑100 (MQ=255)
                                  ataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaaa                                                                  >  1:1201967/1‑100 (MQ=255)
                                       cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt                                                             <  1:1150080/100‑1 (MQ=255)
                                       cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt                                                             >  2:1863336/1‑100 (MQ=255)
                                         cTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaa                                                           >  2:1599286/1‑100 (MQ=255)
                                         cTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaa                                                           <  1:1498971/100‑1 (MQ=255)
                                          tGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaaa                                                          >  2:854725/1‑100 (MQ=255)
                                          tGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCAAAAATCCTTaa                                                           <  2:1815541/99‑1 (MQ=255)
                                           gCCGGATGCGATGCTGACGCATCTTATCCGTCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat                                                         <  2:1554290/100‑1 (MQ=255)
                                           gCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat                                                         <  2:1653210/100‑1 (MQ=255)
                                           gCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGATTACGCCGCATCCGGCAAAAATCCTTAAat                                                         >  1:1694075/1‑100 (MQ=255)
                                              ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAGGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAAtata                                                      <  2:1258725/100‑1 (MQ=255)
                                              ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAAtata                                                      <  2:766074/100‑1 (MQ=255)
                                              ggATGCGATGCTGACGCATCTTATCCGGCCTAAAGATTGCTGCGAAATCGTAGGCTGGATAAGGCGTTTACGCAGCATCAGGCAAAAATCCTTAAAtata                                                      <  2:857336/100‑1 (MQ=25)
                                                atgcgatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAag                                                    >  2:2106897/1‑100 (MQ=255)
                                                 tgcgatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga                                                   <  2:1142732/100‑1 (MQ=255)
                                                    gatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAagag                                                  <  2:911342/98‑1 (MQ=255)
                                                    gatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCa                                                >  2:474566/1‑100 (MQ=255)
                                                      tgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCaaa                                              >  1:1743029/1‑100 (MQ=255)
                                                      tgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCaaa                                              <  1:363783/100‑1 (MQ=255)
                                                       gcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAAc                                             <  1:712780/100‑1 (MQ=255)
                                                        cTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAAcc                                            >  1:422478/1‑100 (MQ=255)
                                                        cTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAAcc                                            <  2:272404/100‑1 (MQ=255)
                                                        cTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAAcc                                            <  2:1024292/100‑1 (MQ=255)
                                                             gCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCAt                                       <  1:2081398/100‑1 (MQ=255)
                                                               aTCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt                                     >  2:558769/1‑100 (MQ=255)
                                                               aTCTTATCCGGCCTACAGATAGCTACGAAATCATAGGCTAGATAAGGTTTTTACGCAAAAAAAAAAAAAAATCCTTAAATATAAGAGCAAACCTGCAt                                       <  2:2190922/98‑1 (MQ=255)
                                                                tCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAATCCTTAAATATAAGAGCAAACCTGCATGTc                                    <  2:1349099/100‑1 (MQ=255)
                                                                tCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTc                                    <  1:782615/100‑1 (MQ=255)
                                                                tCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTc                                    >  1:1005832/1‑100 (MQ=255)
                                                                   tATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGa                                 >  1:1262695/1‑100 (MQ=255)
                                                                   tATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGa                                 >  2:451307/1‑100 (MQ=255)
                                                                     tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAAt                               <  1:959539/100‑1 (MQ=255)
                                                                     tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAAt                               >  2:1916164/1‑100 (MQ=255)
                                                                     tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAAt                               <  1:558768/100‑1 (MQ=255)
                                                                      ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATc                              >  1:1791049/1‑100 (MQ=255)
                                                                        ggCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTg                            >  1:671689/1‑100 (MQ=255)
                                                                        ggCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTg                            <  1:451306/100‑1 (MQ=255)
                                                                          ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGAAATCCTTAAATATAAGAGCAAACCTCCATTTCTCAATCTGTa                          >  2:552886/1‑100 (MQ=37)
                                                                          ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTa                          >  2:396075/1‑100 (MQ=255)
                                                                           cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTa                          >  1:608750/1‑99 (MQ=255)
                                                                           cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAc                         <  2:52661/100‑1 (MQ=255)
                                                                           cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGACCAAACCTGCATGTCTGAATCTGTAc                         >  1:701741/1‑100 (MQ=255)
                                                                            tACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAc                         <  1:1170474/99‑1 (MQ=255)
                                                                            tACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACa                        >  1:1201204/1‑100 (MQ=255)
                                                                              cAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACaga                      <  1:756439/100‑1 (MQ=255)
                                                                                gATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGc                    <  1:1936354/100‑1 (MQ=255)
                                                                                gATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGc                    >  2:1683652/1‑100 (MQ=255)
                                                                                  ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCaa                  <  1:1344085/100‑1 (MQ=255)
                                                                                    gctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATa                <  2:1830747/100‑1 (MQ=255)
                                                                                     ctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAACCCTGCATGTCTGAATCTGTACAGAGCAATAg               <  2:1357345/100‑1 (MQ=255)
                                                                                     ctgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAg               <  2:2039082/100‑1 (MQ=255)
                                                                                      tgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAgc              >  1:892706/1‑100 (MQ=255)
                                                                                       gcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAgcg             >  1:931078/1‑100 (MQ=255)
                                                                                       gcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAgcg             <  1:617841/100‑1 (MQ=255)
                                                                                       gcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAgcg             >  1:1804695/1‑100 (MQ=255)
                                                                                         gAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGcc           >  1:1614862/1‑100 (MQ=255)
                                                                                             tCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGCCGTcc       <  1:294514/100‑1 (MQ=255)
                                                                                              cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGCCGTCCt      >  2:1707352/1‑100 (MQ=255)
                                                                                               gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGCCGTCCTg     >  2:2000984/1‑100 (MQ=255)
                                                                                                 aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGCCGTCCTGGt   >  2:1026905/1‑100 (MQ=255)
                                                                                                  ggccggataaggcgtttacgccgcatccggcctacacatgcgtccccgtaggtcggataagacgcgccagcgtcgcatccgacattttaggcacagtagc  >  2:466625‑M1/1‑1 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGAAATAGCGCCGTCCTGGTg  >  2:586231/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTACAGAGCAATAGCGCCGTCCTGGTG  >  NC_000913/25667‑25864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.